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Research

Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells

Juan Carlos Rivera-Mulia
Quinton Buckley
Takayo Sasaki
Jared Zimmerman
Ruth A. Didier
Kristopher Nazor Jeanne F. Loring Zheng Lian Sherman Weissman Allan J. Robins Thomas C. Schulz Laura Menendez Michael J. Kulik
... [+8 authors] ...,
Stephen Dalton
Haitham Gabr
Tamer Kahveci
David M. Gilbert

First Published June 8, 2015

Resource

Geobacter sulfurreducens genome" > Structural and operational complexity of the Geobacter sulfurreducens genome

Yu Qiu
Byung-Kwan Cho
Young Seoub Park
Derek Lovley
Bernhard Ø. Palsson
Karsten Zengler

First Published June 30, 2010

LETTER

Escherichia coli indicates a causative role for A-/AT-tracts" > Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts

Byung-Kwan Cho
Eric M. Knight
Christian L. Barrett
Bernhard Ø. Palsson

First Published March 13, 2008

LETTER

Systematic condition-dependent annotation of metabolic genes

Tomer Shlomi
Markus Herrgard
Vasiliy Portnoy
Efrat Naim
Bernhard Ø. Palsson
Roded Sharan
Eytan Ruppin

First Published September 25, 2007

LETTER

Human embryonic stem cells have a unique epigenetic signature

Marina Bibikova
Eugene Chudin
Bonnie Wu
Lixin Zhou
Eliza Wickham Garcia
Ying Liu Soojung Shin Todd W. Plaia Jonathan M. Auerbach Dan E. Arking Rodolfo Gonzalez Jeremy Crook Bruce Davidson Thomas C. Schulz Allan Robins Aparna Khanna Peter Sartipy Johan Hyllner Padmavathy Vanguri Smita Savant-Bhonsale Alan K. Smith Aravinda Chakravarti Anirban Maitra
... [+18 authors] ...,
Mahendra Rao
David L. Barker
Jeanne F. Loring
Jian-Bing Fan

First Published August 9, 2006

LETTER

Saccharomyces cerevisiae" > Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae

Markus J. Herrgård
Baek-Seok Lee
Vasiliy Portnoy
Bernhard Ø. Palsson

First Published April 10, 2006

LETTER

Escherichia coli lead to convergent growth phenotypes with different gene expression states" > Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states

Stephen S. Fong
Andrew R. Joyce
Bernhard Ø. Palsson

First Published October 3, 2005

Methods

Escherichia coli-K12" > High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12

Christiane Honisch
Anu Raghunathan
Charles R. Cantor
Bernhard Ø. Palsson
Dirk van den Boom

First Published December 1, 2004

Methods

E. coli Have Multiple Equivalent Phenotypic States: Assessment of Correlated Reaction Subsets That Comprise Network States" > Genome-Scale In Silico Models of E. coli Have Multiple Equivalent Phenotypic States: Assessment of Correlated Reaction Subsets That Comprise Network States

Jennifer L. Reed
Bernhard Ø. Palsson

First Published September 1, 2004

LETTER

Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model" > Reconstruction and Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model

Natalie C. Duarte
Markus J. Herrgård
Bernhard Ø. Palsson

First Published June 14, 2004

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