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Perspective

The Topological Regulatory Logic of noncoding RNA–mediated gene expression

  • First Published June 17, 2026
Method

Optimal marker genes for c-separated cell types with SepSolve

  • First Published October 9, 2025
Method

Partial alignment of multislice spatially resolved transcriptomics data

  • First Published August 8, 2023
Method

Linear-time cluster ensembles of large-scale single-cell RNA-seq and multimodal data

  • First Published February 24, 2021
Method

Reconstruction of clone- and haplotype-specific cancer genome karyotypes from bulk tumor samples

  • First Published September 4, 2020
Resource

A limited set of transcriptional programs define major cell types

  • First Published July 29, 2020
Resource

Dynamics of microRNA expression during mouse prenatal development

  • First Published October 23, 2019
Research

Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function

  • First Published August 14, 2019
Method

Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors

  • First Published October 13, 2017
Resource

GenomeVIP: a cloud platform for genomic variant discovery and interpretation

  • First Published May 18, 2017
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