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Resource

Uniform processing and analysis of IGVF massively parallel reporter assay data with MPRAsnakeflow

  • Jonathan D. Rosen
  • Arjun Devadas Vasanthakumari
  • Kilian Salomon
  • Nikola de Lange
  • Pyaree Mohan Dash
  • Pia Keukeleire Ali Hassan Alejandro Barrera Beniamin Krupkin
  • ... [+4 authors] ...,
  • Grace Oualline
  • Martin Kircher
  • Michael I. Love
  • Max Schubach
  • First Published August 11, 2026
Research

Spatially resolved profiling of steroid nuclear receptors reveals a role for the disordered N-terminal domains in genome targeting and AP-1 interaction

  • Inbal Zigdon
  • Achinoam Shoham
  • Vladimir Mindel
  • Wajd Manadre
  • David Jan
  • Beniamin Krupkin
  • Dekel Yahav Har-Shai
  • Yaron Antebi
  • Naama Barkai
  • First Published June 22, 2026
Corrigendum

Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping

  • Jordan A. Ramilowski
  • Chi Wai Yip
  • Saumya Agrawal
  • Jen-Chien Chang
  • Yari Ciani
  • Ivan V. Kulakovskiy Mickaël Mendez Jasmine Li Ching Ooi John F. Ouyang Nick Parkinson Andreas Petri Leonie Roos Jessica Severin Kayoko Yasuzawa Imad Abugessaisa Altuna Akalin Ivan V. Antonov Erik Arner Alessandro Bonetti Hidemasa Bono Beatrice Borsari Frank Brombacher Christopher J.F. Cameron Carlo Vittorio Cannistraci Ryan Cardenas Melissa Cardon Howard Chang Josée Dostie Luca Ducoli Alexander Favorov Alexandre Fort Diego Garrido Noa Gil Juliette Gimenez Reto Guler Lusy Handoko Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Kosuke Hashimoto Norihito Hayatsu Peter Heutink Tetsuro Hirose Eddie L. Imada Masayoshi Itoh Bogumil Kaczkowski Aditi Kanhere Emily Kawabata Hideya Kawaji Tsugumi Kawashima S. Thomas Kelly Miki Kojima Naoto Kondo Haruhiko Koseki Tsukasa Kouno Anton Kratz Mariola Kurowska-Stolarska Andrew Tae Jun Kwon Jeffrey Leek Andreas Lennartsson Marina Lizio Fernando López-Redondo Joachim Luginbühl Shiori Maeda Vsevolod J. Makeev Luigi Marchionni Yulia A. Medvedeva Aki Minoda Ferenc Müller Manuel Muñoz-Aguirre Mitsuyoshi Murata Hiromi Nishiyori Kazuhiro R. Nitta Shuhei Noguchi Yukihiko Noro Ramil Nurtdinov Yasushi Okazaki Valerio Orlando Denis Paquette Callum J.C. Parr Owen J.L. Rackham Patrizia Rizzu Diego Fernando Sánchez Martinez Albin Sandelin Pillay Sanjana Colin A.M. Semple Youtaro Shibayama Divya M. Sivaraman Takahiro Suzuki Suzannah C. Szumowski Michihira Tagami Martin S. Taylor Chikashi Terao Malte Thodberg Supat Thongjuea Vidisha Tripathi Igor Ulitsky Roberto Verardo Ilya E. Vorontsov Chinatsu Yamamoto Robert S. Young J. Kenneth Baillie Alistair R.R. Forrest Roderic Guigó Michael M. Hoffman Chung Chau Hon Takeya Kasukawa Sakari Kauppinen Juha Kere Boris Lenhard Claudio Schneider Harukazu Suzuki
  • ... [+107 authors] ...,
  • Ken Yagi
  • Michiel J.L. de Hoon
  • Jay W. Shin
  • Piero Carninci
  • First Published September 14, 2020
Resource

Functional annotation of human long noncoding RNAs via molecular phenotyping

  • Jordan A. Ramilowski
  • Chi Wai Yip
  • Saumya Agrawal
  • Jen-Chien Chang
  • Yari Ciani
  • Ivan V. Kulakovskiy Mickaël Mendez Jasmine Li Ching Ooi John F. Ouyang Nick Parkinson Andreas Petri Leonie Roos Jessica Severin Kayoko Yasuzawa Imad Abugessaisa Altuna Akalin Ivan V. Antonov Erik Arner Alessandro Bonetti Hidemasa Bono Beatrice Borsari Frank Brombacher Christopher J.F. Cameron Carlo Vittorio Cannistraci Ryan Cardenas Melissa Cardon Howard Chang Josée Dostie Luca Ducoli Alexander Favorov Alexandre Fort Diego Garrido Noa Gil Juliette Gimenez Reto Guler Lusy Handoko Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Kosuke Hashimoto Norihito Hayatsu Peter Heutink Tetsuro Hirose Eddie L. Imada Masayoshi Itoh Bogumil Kaczkowski Aditi Kanhere Emily Kawabata Hideya Kawaji Tsugumi Kawashima S. Thomas Kelly Miki Kojima Naoto Kondo Haruhiko Koseki Tsukasa Kouno Anton Kratz Mariola Kurowska-Stolarska Andrew Tae Jun Kwon Jeffrey Leek Andreas Lennartsson Marina Lizio Fernando López-Redondo Joachim Luginbühl Shiori Maeda Vsevolod J. Makeev Luigi Marchionni Yulia A. Medvedeva Aki Minoda Ferenc Müller Manuel Muñoz-Aguirre Mitsuyoshi Murata Hiromi Nishiyori Kazuhiro R. Nitta Shuhei Noguchi Yukihiko Noro Ramil Nurtdinov Yasushi Okazaki Valerio Orlando Denis Paquette Callum J.C. Parr Owen J.L. Rackham Patrizia Rizzu Diego Fernando Sánchez Martinez Albin Sandelin Pillay Sanjana Colin A.M. Semple Youtaro Shibayama Divya M. Sivaraman Takahiro Suzuki Suzannah C. Szumowski Michihira Tagami Martin S. Taylor Chikashi Terao Malte Thodberg Supat Thongjuea Vidisha Tripathi Igor Ulitsky Roberto Verardo Ilya E. Vorontsov Chinatsu Yamamoto Robert S. Young J. Kenneth Baillie Alistair R.R. Forrest Roderic Guigó Michael M. Hoffman Chung Chau Hon Takeya Kasukawa Sakari Kauppinen Juha Kere Boris Lenhard Claudio Schneider Harukazu Suzuki
  • ... [+107 authors] ...,
  • Ken Yagi
  • Michiel J.L. de Hoon
  • Jay W. Shin
  • Piero Carninci
  • First Published July 27, 2020
LETTER

The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment

  • Sean M. Grimmond
  • Kevin C. Miranda
  • Zheng Yuan
  • Melissa J. Davis
  • David A. Hume
  • Ken Yagi Naoko Tominaga
  • ... [+2 authors] ...,
  • Hidemasa Bono
  • Yoshihide Hayashizaki
  • Yasushi Okazaki
  • Rohan D. Teasdale
  • First Published June 2, 2003
LETTER

Continued Discovery of Transcriptional Units Expressed in Cells of the Mouse Mononuclear Phagocyte Lineage

  • Christine A. Wells
  • Timothy Ravasi
  • Razvan Sultana
  • Ken Yagi
  • Piero Carninci
  • Hidemasa Bono Geoffrey Faulkner
  • ... [+2 authors] ...,
  • Yasushi Okazaki
  • John Quackenbush
  • David A. Hume
  • Paul A. Lyons
  • First Published June 2, 2003
COMMENTARY

A Guide to the Mammalian Genome

  • Yasushi Okazaki
  • David A. Hume
  • First Published June 2, 2003
LETTER

Systematic Expression Profiling of the Mouse Transcriptome Using RIKEN cDNA Microarrays

  • Hidemasa Bono
  • Ken Yagi
  • Takeya Kasukawa
  • Itoshi Nikaido
  • Naoko Tominaga
  • Rika Miki Yosuke Mizuno Yasuhiro Tomaru Hitoshi Goto Hiroyuki Nitanda Daisuke Shimizu Hirochika Makino Tomoyuki Morita Junshin Fujiyama Takehito Sakai
  • ... [+10 authors] ...,
  • Takashi Shimoji
  • David A. Hume
  • Yoshihide Hayashizaki
  • Yasushi Okazaki
  • First Published June 2, 2003
LETTER

Comprehensive Analysis of the Mouse Metabolome Based on the Transcriptome

  • Hidemasa Bono
  • Itoshi Nikaido
  • Takeya Kasukawa
  • Yoshihide Hayashizaki
  • Yasushi Okazaki
  • First Published June 2, 2003
RESOURCE

Development and Evaluation of an Automated Annotation Pipeline and cDNA Annotation System

  • Takeya Kasukawa
  • Masaaki Furuno
  • Itoshi Nikaido
  • Hidemasa Bono
  • David A. Hume
  • Carol Bult David P. Hill Richard Baldarelli Julian Gough Alexander Kanapin Hideo Matsuda
  • ... [+6 authors] ...,
  • Lynn M. Schriml
  • Yoshihide Hayashizaki
  • Yasushi Okazaki
  • John Quackenbush
  • First Published June 2, 2003
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