Corrigendum
Corrigendum: Profiling the long noncoding RNA interaction network in the regulatory elements of target genes by chromatin in situ reverse transcription sequencing
- First Published October 1, 2026
Research
Characterizing cytosine methylation of polymorphic transposable element insertions using the human pangenome resources
- First Published May 14, 2026
Research
Assessing DNA methylation detection for primary human tissue using Nanopore sequencing
- First Published March 7, 2025
Method
Phased nanopore assembly with Shasta and modular graph phasing with GFAse
- First Published April 16, 2024
Research
Gaps and complex structurally variant loci in phased genome assemblies
- First Published May 10, 2023
Method
A complete pedigree-based graph workflow for rare candidate variant analysis
- First Published April 28, 2022
Research
Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans
- First Published October 19, 2021
Research
Genome-wide mapping reveals R-loops associated with centromeric repeats in maize
- First Published July 9, 2021
Method
Analysis of alternative polyadenylation from single-cell RNA-seq using scDaPars reveals cell subpopulations invisible to gene expression
- First Published May 25, 2021
Corrigendum
Corrigendum: 3′ UTR lengthening as a novel mechanism in regulating cellular senescence
- First Published September 14, 2020
Method
A novel synthetic-genetic-array–based yeast one-hybrid system for high discovery rate and short processing time
- First Published June 11, 2019
Method
Guide Positioning Sequencing identifies aberrant DNA methylation patterns that alter cell identity and tumor-immune surveillance networks
- First Published January 22, 2019
Method
Chromosome assembly of large and complex genomes using multiple references
- First Published October 19, 2018
Method
Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation
- First Published June 8, 2018
Research
Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells
- First Published May 24, 2018
Research
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
- First Published March 21, 2018
Research
3′ UTR lengthening as a novel mechanism in regulating cellular senescence
- First Published February 12, 2018
Research
Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis
- First Published December 22, 2017
Method
Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
- First Published October 11, 2017
Method
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
- First Published October 11, 2017
Research
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling
- First Published January 30, 2017
Resource
Alignathon: a competitive assessment of whole-genome alignment methods
- First Published October 1, 2014
Method
DANPOS: Dynamic analysis of nucleosome position and occupancy by sequencing
- First Published November 28, 2012
Research
Stabilization of the promoter nucleosomes in nucleosome-free regions by the yeast Cyc8–Tup1 corepressor
- First Published November 2, 2012
Resource
Assemblathon 1: A competitive assessment of de novo short read assembly methods
- First Published September 16, 2011
Research
Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation
- First Published March 1, 2011
Resource
The Drosophila melanogaster transcriptome by paired-end RNA sequencing
- First Published December 22, 2010
Research
Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq
- First Published July 13, 2010
Methods
DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression
- First Published October 29, 2008
Methods
Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs
- First Published October 10, 2008
Methods
Genome-wide nucleotide-level mammalian ancestor reconstruction
- First Published October 10, 2008
LETTER
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
