Research
Characterizing cytosine methylation of polymorphic transposable element insertions using the human pangenome resources
- First Published May 14, 2026
Erratum
Erratum: Expanded methylome and quantitative trait loci detection by long-read profiling of personal DNA
- First Published March 2, 2026
Method
Read-level genotyping of short tandem repeats using long reads and single-nucleotide variation with STRkit
- First Published January 15, 2026
Research
Expanded methylome and quantitative trait loci detection by long-read profiling of personal DNA
- First Published March 20, 2025
Research
Gaps and complex structurally variant loci in phased genome assemblies
- First Published May 10, 2023
Research
Functional characterization of enhancer activity during a long terminal repeat's evolution
- First Published October 3, 2022
Research
Genomic environments scale the activities of diverse core promoters
- First Published December 27, 2021
Method
Ultrafast functional profiling of RNA-seq data for nonmodel organisms
- First Published March 17, 2021
Research
cis-regulatory activity" > Local sequence features that influence AP-1 cis-regulatory activity
- First Published January 5, 2018
Research
cis-regulation in embryonic stem cells" > Interactions between pluripotency factors specify cis-regulation in embryonic stem cells
- First Published April 15, 2016
Research
Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites
- First Published October 20, 2015
Research
High-throughput functional testing of ENCODE segmentation predictions
- First Published July 17, 2014
Method
Massively parallel synthetic promoter assays reveal the in vivo effects of binding site variants
- First Published August 6, 2013
Research
Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition
- First Published May 9, 2011
Research
Transcriptional consequences of genomic structural aberrations in breast cancer
- First Published April 5, 2011
Research
Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes
- First Published April 5, 2011
LETTER
Evolution of the mammalian transcription factor binding repertoire via transposable elements
- First Published August 5, 2008
RESOURCE
Initial sequence and comparative analysis of the cat genome
- First Published November 1, 2007
LETTER
Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)
- First Published June 13, 2007
Forum
The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction
- First Published March 1, 2006
Methods
Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics
- First Published August 2, 2005
Chicken Special/Letters
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages
- First Published December 8, 2004
ARTICLE
Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons From Human, Mouse, and Rat Genomes
- First Published April 1, 2004
LETTER
Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species
- First Published January 1, 2002