Search | Genome Research

C. Thomas Caskey (1938–2022)

Richard A. Gibbs
Aravinda Chakravarti
Evan E. Eichler
Eric D. Green
Richard M. Myers
Anne C. Ferguson-Smith
Kateryna D. Makova
Hillary E. Sussman

First Published February 17, 2022

Deborah A. Nickerson (1954 –2021)

Aravinda Chakravarti
Evan E. Eichler
Richard A. Gibbs
Eric D. Green
Richard M. Myers
Hillary E. Sussman

First Published January 24, 2022

RET regulatory code is disrupted in Hirschsprung disease" > A multi-enhancer RET regulatory code is disrupted in Hirschsprung disease

Sumantra Chatterjee
Kameko M. Karasaki
Lauren E. Fries
Ashish Kapoor
Aravinda Chakravarti

First Published November 15, 2021

Embryonic LTR retrotransposons supply promoter modules to somatic tissues

Kosuke Hashimoto
Eeva-Mari Jouhilahti
Virpi Töhönen
Piero Carninci
Juha Kere
Shintaro Katayama

First Published October 21, 2021

Sequence-based correction of barcode bias in massively parallel reporter assays

Dongwon Lee
Ashish Kapoor
Changhee Lee
Michael Mudgett
Michael A. Beer
Aravinda Chakravarti

First Published July 20, 2021

Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping

Jordan A. Ramilowski
Chi Wai Yip
Saumya Agrawal
Jen-Chien Chang
Yari Ciani
Ivan V. Kulakovskiy Mickaël Mendez Jasmine Li Ching Ooi John F. Ouyang Nick Parkinson Andreas Petri Leonie Roos Jessica Severin Kayoko Yasuzawa Imad Abugessaisa Altuna Akalin Ivan V. Antonov Erik Arner Alessandro Bonetti Hidemasa Bono Beatrice Borsari Frank Brombacher Christopher J.F. Cameron Carlo Vittorio Cannistraci Ryan Cardenas Melissa Cardon Howard Chang Josée Dostie Luca Ducoli Alexander Favorov Alexandre Fort Diego Garrido Noa Gil Juliette Gimenez Reto Guler Lusy Handoko Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Kosuke Hashimoto Norihito Hayatsu Peter Heutink Tetsuro Hirose Eddie L. Imada Masayoshi Itoh Bogumil Kaczkowski Aditi Kanhere Emily Kawabata Hideya Kawaji Tsugumi Kawashima S. Thomas Kelly Miki Kojima Naoto Kondo Haruhiko Koseki Tsukasa Kouno Anton Kratz Mariola Kurowska-Stolarska Andrew Tae Jun Kwon Jeffrey Leek Andreas Lennartsson Marina Lizio Fernando López-Redondo Joachim Luginbühl Shiori Maeda Vsevolod J. Makeev Luigi Marchionni Yulia A. Medvedeva Aki Minoda Ferenc Müller Manuel Muñoz-Aguirre Mitsuyoshi Murata Hiromi Nishiyori Kazuhiro R. Nitta Shuhei Noguchi Yukihiko Noro Ramil Nurtdinov Yasushi Okazaki Valerio Orlando Denis Paquette Callum J.C. Parr Owen J.L. Rackham Patrizia Rizzu Diego Fernando Sánchez Martinez Albin Sandelin Pillay Sanjana Colin A.M. Semple Youtaro Shibayama Divya M. Sivaraman Takahiro Suzuki Suzannah C. Szumowski Michihira Tagami Martin S. Taylor Chikashi Terao Malte Thodberg Supat Thongjuea Vidisha Tripathi Igor Ulitsky Roberto Verardo Ilya E. Vorontsov Chinatsu Yamamoto Robert S. Young J. Kenneth Baillie Alistair R.R. Forrest Roderic Guigó Michael M. Hoffman Chung Chau Hon Takeya Kasukawa Sakari Kauppinen Juha Kere Boris Lenhard Claudio Schneider Harukazu Suzuki
... [+107 authors] ...,
Ken Yagi
Michiel J.L. de Hoon
Jay W. Shin
Piero Carninci

First Published September 14, 2020

Functional annotation of human long noncoding RNAs via molecular phenotyping

Jordan A. Ramilowski
Chi Wai Yip
Saumya Agrawal
Jen-Chien Chang
Yari Ciani
Ivan V. Kulakovskiy Mickaël Mendez Jasmine Li Ching Ooi John F. Ouyang Nick Parkinson Andreas Petri Leonie Roos Jessica Severin Kayoko Yasuzawa Imad Abugessaisa Altuna Akalin Ivan V. Antonov Erik Arner Alessandro Bonetti Hidemasa Bono Beatrice Borsari Frank Brombacher Christopher J.F. Cameron Carlo Vittorio Cannistraci Ryan Cardenas Melissa Cardon Howard Chang Josée Dostie Luca Ducoli Alexander Favorov Alexandre Fort Diego Garrido Noa Gil Juliette Gimenez Reto Guler Lusy Handoko Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Kosuke Hashimoto Norihito Hayatsu Peter Heutink Tetsuro Hirose Eddie L. Imada Masayoshi Itoh Bogumil Kaczkowski Aditi Kanhere Emily Kawabata Hideya Kawaji Tsugumi Kawashima S. Thomas Kelly Miki Kojima Naoto Kondo Haruhiko Koseki Tsukasa Kouno Anton Kratz Mariola Kurowska-Stolarska Andrew Tae Jun Kwon Jeffrey Leek Andreas Lennartsson Marina Lizio Fernando López-Redondo Joachim Luginbühl Shiori Maeda Vsevolod J. Makeev Luigi Marchionni Yulia A. Medvedeva Aki Minoda Ferenc Müller Manuel Muñoz-Aguirre Mitsuyoshi Murata Hiromi Nishiyori Kazuhiro R. Nitta Shuhei Noguchi Yukihiko Noro Ramil Nurtdinov Yasushi Okazaki Valerio Orlando Denis Paquette Callum J.C. Parr Owen J.L. Rackham Patrizia Rizzu Diego Fernando Sánchez Martinez Albin Sandelin Pillay Sanjana Colin A.M. Semple Youtaro Shibayama Divya M. Sivaraman Takahiro Suzuki Suzannah C. Szumowski Michihira Tagami Martin S. Taylor Chikashi Terao Malte Thodberg Supat Thongjuea Vidisha Tripathi Igor Ulitsky Roberto Verardo Ilya E. Vorontsov Chinatsu Yamamoto Robert S. Young J. Kenneth Baillie Alistair R.R. Forrest Roderic Guigó Michael M. Hoffman Chung Chau Hon Takeya Kasukawa Sakari Kauppinen Juha Kere Boris Lenhard Claudio Schneider Harukazu Suzuki
... [+107 authors] ...,
Ken Yagi
Michiel J.L. de Hoon
Jay W. Shin
Piero Carninci

First Published July 27, 2020

Corrigendum: Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development

Michal Pawlak
Katarzyna Z. Kedzierska
Maciej Migdal
Karim Abu Nahia
Jordan A. Ramilowski
Lukasz Bugajski Kosuke Hashimoto
... [+2 authors] ...,
Aleksandra Marconi
Katarzyna Piwocka
Piero Carninci
Cecilia L. Winata

First Published January 9, 2020

Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development

Michal Pawlak
Katarzyna Z. Kedzierska
Maciej Migdal
Karim Abu Nahia
Jordan A. Ramilowski
Lukasz Bugajski Kosuke Hashimoto
... [+2 authors] ...,
Aleksandra Marconi
Katarzyna Piwocka
Piero Carninci
Cecilia L. Winata

First Published February 13, 2019

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

Dongwon Lee
Ashish Kapoor
Alexias Safi
Lingyun Song
Marc K. Halushka
Gregory E. Crawford
Aravinda Chakravarti

First Published August 23, 2018

CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors

Kosuke Hashimoto
Ana Maria Suzuki
Alexandre Dos Santos
Christophe Desterke
Agnese Collino
Serena Ghisletti Emilie Braun Alessandro Bonetti Alexandre Fort Xian-Yang Qin Enrico Radaelli Bogumil Kaczkowski Alistair R.R. Forrest Soichi Kojima Didier Samuel
... [+10 authors] ...,
Gioacchino Natoli
Marie Annick Buendia
Jamila Faivre
Piero Carninci

First Published October 28, 2015

Genomic contributions to Mendelian disease

Aravinda Chakravarti

First Published May 2, 2011

Human embryonic stem cells have a unique epigenetic signature

Marina Bibikova
Eugene Chudin
Bonnie Wu
Lixin Zhou
Eliza Wickham Garcia
Ying Liu Soojung Shin Todd W. Plaia Jonathan M. Auerbach Dan E. Arking Rodolfo Gonzalez Jeremy Crook Bruce Davidson Thomas C. Schulz Allan Robins Aparna Khanna Peter Sartipy Johan Hyllner Padmavathy Vanguri Smita Savant-Bhonsale Alan K. Smith Aravinda Chakravarti Anirban Maitra
... [+18 authors] ...,
Mahendra Rao
David L. Barker
Jeanne F. Loring
Jian-Bing Fan

First Published August 9, 2006

On the probability that a novel variant is a disease-causing mutation

Adele A. Mitchell
Aravinda Chakravarti
David J. Cutler

First Published June 17, 2005

Haplotype and Missing Data Inference in Nuclear Families

Shin Lin
Aravinda Chakravarti
David J. Cutler

First Published July 15, 2004

The Human MitoChip: A High-Throughput Sequencing Microarray for Mitochondrial Mutation Detection

Anirban Maitra
Yoram Cohen
Susannah E.D. Gillespie
Elizabeth Mambo
Noriyoshi Fukushima
Mohammad O. Hoque Nila Shah
... [+2 authors] ...,
Michael Goggins
Joseph Califano
David Sidransky
Aravinda Chakravarti

First Published May 3, 2004

Development of Human Protein Reference Database as an Initial Platform for Approaching Systems Biology in Humans

Suraj Peri
J. Daniel Navarro
Ramars Amanchy
Troels Z. Kristiansen
Chandra Kiran Jonnalagadda
Vineeth Surendranath Vidya Niranjan Babylakshmi Muthusamy T.K.B. Gandhi Mads Gronborg Nieves Ibarrola Nandan Deshpande K. Shanker H.N. Shivashankar B.P. Rashmi M.A. Ramya Zhixing Zhao K.N. Chandrika N. Padma H.C. Harsha A.J. Yatish M.P. Kavitha Minal Menezes Dipanwita Roy Choudhury Shubha Suresh Neelanjana Ghosh R. Saravana Sreenath Chandran Subhalakshmi Krishna Mary Joy Sanjeev K. Anand V. Madavan Ansamma Joseph Guang W. Wong William P. Schiemann Stefan N. Constantinescu Lily Huang Roya Khosravi-Far Hanno Steen Muneesh Tewari Saghi Ghaffari Gerard C. Blobe Chi V. Dang Joe G.N. Garcia Jonathan Pevsner Ole N. Jensen Peter Roepstorff Krishna S. Deshpande
... [+43 authors] ...,
Arul M. Chinnaiyan
Ada Hamosh
Aravinda Chakravarti
Akhilesh Pandey

First Published October 2, 2003

Linkage Disequilibrium and Haplotype Diversity in the Genes of the Renin–Angiotensin System: Findings From the Family Blood Pressure Program

Xiaofeng Zhu
Denise Yan
Richard S. Cooper
Amy Luke
Morna A. Ikeda
Yen-Pei C. Chang
Alan Weder
Aravinda Chakravarti

First Published January 14, 2003

viewGene : A Graphical Tool for Polymorphism Visualization and Characterization" > `viewGene`: A Graphical Tool for Polymorphism Visualization and Characterization

Carl Kashuk
Sanghamitra SenGupta
Evan Eichler
Aravinda Chakravarti

First Published February 1, 2002

High-Throughput Variation Detection and Genotyping Using Microarrays

David J. Cutler
Michael E. Zwick
Minerva M. Carrasquillo
Christopher T. Yohn
Katherine P. Tobin
Carl Kashuk Debra J. Mathews
... [+2 authors] ...,
Nila A. Shah
Evan E. Eichler
Janet A. Warrington
Aravinda Chakravarti

First Published October 15, 2001

Sequence Variation Within the Fragile X Locus

Debra J. Mathews
Carl Kashuk
Gale Brightwell
Evan E. Eichler
Aravinda Chakravarti

First Published August 1, 2001

The Human Genome Sequence Expedition: Views from the “Base Camp”

Eric D. Green
Aravinda Chakravarti

First Published May 1, 2001

Patterns of Meiotic Recombination on the Long Arm of Human Chromosome 21

Audrey Lynn
Carl Kashuk
Michael B. Petersen
Jeffrey A. Bailey
David R. Cox
Stylianos E. Antonarakis
Aravinda Chakravarti

First Published September 1, 2000

Parallel Genotyping of Human SNPs Using Generic High-density Oligonucleotide Tag Arrays

Jian-Bing Fan
Xiaoqiong Chen
Marc K. Halushka
Anthony Berno
Xiaohua Huang
Thomas Ryder
Robert J. Lipshutz
David J. Lockhart
Aravinda Chakravarti

First Published June 1, 2000

Sox10^Dom Mouse: Modeling the Genetic Variation of Waardenburg-Shah (WS4) Syndrome" > The Sox10^Dom Mouse: Modeling the Genetic Variation of Waardenburg-Shah (WS4) Syndrome

E. Michelle Southard-Smith
Misha Angrist
Jane S. Ellison
Richa Agarwala
Andreas D. Baxevanis
Aravinda Chakravarti
William J. Pavan

First Published March 1, 1999

A DNA Polymorphism Discovery Resource for Research on Human Genetic Variation

Francis S. Collins
Lisa D. Brooks
Aravinda Chakravarti

First Published December 1, 1998

Allele Frequency Distributions in Pooled DNA Samples: Applications to Mapping Complex Disease Genes

Sarah H. Shaw
Minerva M. Carrasquillo
Carl Kashuk
Erik G. Puffenberger
Aravinda Chakravarti

First Published February 1, 1998

The End of the Beginning: The Race to Begin Human Genome Sequencing

Mark Boguski
Aravinda Chakravarti
Richard Gibbs
Eric Green
Richard M. Myers

First Published September 1, 1996

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Your search for returned 28 results

C. Thomas Caskey (1938–2022)

Deborah A. Nickerson (1954 –2021)

RET regulatory code is disrupted in Hirschsprung disease" > A multi-enhancer RET regulatory code is disrupted in Hirschsprung disease

Embryonic LTR retrotransposons supply promoter modules to somatic tissues

Sequence-based correction of barcode bias in massively parallel reporter assays

Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping

Functional annotation of human long noncoding RNAs via molecular phenotyping

Corrigendum: Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development

Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors

Genomic contributions to Mendelian disease

Human embryonic stem cells have a unique epigenetic signature

On the probability that a novel variant is a disease-causing mutation

Haplotype and Missing Data Inference in Nuclear Families

The Human MitoChip: A High-Throughput Sequencing Microarray for Mitochondrial Mutation Detection

Development of Human Protein Reference Database as an Initial Platform for Approaching Systems Biology in Humans

Linkage Disequilibrium and Haplotype Diversity in the Genes of the Renin–Angiotensin System: Findings From the Family Blood Pressure Program

viewGene : A Graphical Tool for Polymorphism Visualization and Characterization" > `viewGene`: A Graphical Tool for Polymorphism Visualization and Characterization

High-Throughput Variation Detection and Genotyping Using Microarrays

Sequence Variation Within the Fragile X Locus

The Human Genome Sequence Expedition: Views from the “Base Camp”

Patterns of Meiotic Recombination on the Long Arm of Human Chromosome 21

Parallel Genotyping of Human SNPs Using Generic High-density Oligonucleotide Tag Arrays

Sox10^Dom Mouse: Modeling the Genetic Variation of Waardenburg-Shah (WS4) Syndrome" > The Sox10^Dom Mouse: Modeling the Genetic Variation of Waardenburg-Shah (WS4) Syndrome

A DNA Polymorphism Discovery Resource for Research on Human Genetic Variation

Allele Frequency Distributions in Pooled DNA Samples: Applications to Mapping Complex Disease Genes

The End of the Beginning: The Race to Begin Human Genome Sequencing

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Your search for returned 28 results