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Drosophila melanogaster ovary" > Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary

Satyam P. Srivastav
Cédric Feschotte
Andrew G. Clark

First Published May 15, 2024

Drosophila" > Evidence for the fixation of gene duplications by positive selection in Drosophila

Margarida Cardoso-Moreira
J. Roman Arguello
Srikanth Gottipati
L.G. Harshman
Jennifer K. Grenier
Andrew G. Clark

First Published April 12, 2016

Callithrix jacchus genome" > Discovery of a new repeat family in the Callithrix jacchus genome

Miriam K. Konkel
Brygg Ullmer
Erika L. Arceneaux
Sreeja Sanampudi
Sarah A. Brantley
Robert Hubley
Arian F.A. Smit
Mark A. Batzer

First Published February 25, 2016

Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations

Juan L. Rodriguez-Flores
Khalid Fakhro
Francisco Agosto-Perez
Monica D. Ramstetter
Leonardo Arbiza
Thomas L. Vincent Amal Robay Joel A. Malek Karsten Suhre Lotfi Chouchane Ramin Badii Ajayeb Al-Nabet Al-Marri Charbel Abi Khalil Mahmoud Zirie Amin Jayyousi Jacqueline Salit
... [+11 authors] ...,
Alon Keinan
Andrew G. Clark
Ronald G. Crystal
Jason G. Mezey

First Published January 4, 2016

Monodelphis domestica" > Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica

Xu Wang
Kory C. Douglas
John L. VandeBerg
Andrew G. Clark
Paul B. Samollow

First Published September 24, 2013

Drosophila genomes" > Efficient identification of Y chromosome sequences in the human and Drosophila genomes

Antonio Bernardo Carvalho
Andrew G. Clark

First Published August 6, 2013

Alu insertions in diverse human populations" > Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations

David J. Witherspoon
Yuhua Zhang
Jinchuan Xing
W. Scott Watkins
Hongseok Ha
Mark A. Batzer
Lynn B. Jorde

First Published April 18, 2013

Random X inactivation in the mule and horse placenta

Xu Wang
Donald C. Miller
Andrew G. Clark
Douglas F. Antczak

First Published May 29, 2012

Drosophila simulans clade" > Genome sequencing reveals complex speciation in the Drosophila simulans clade

Daniel Garrigan
Sarah B. Kingan
Anthony J. Geneva
Peter Andolfatto
Andrew G. Clark
Kevin R. Thornton
Daven C. Presgraves

First Published April 13, 2012

Disentangling the relationship between sex-biased gene expression and X-linkage

Richard P. Meisel
John H. Malone
Andrew G. Clark

First Published April 12, 2012

Impact of microRNA regulation on variation in human gene expression

Jian Lu
Andrew G. Clark

First Published March 28, 2012

Reading TE leaves: New approaches to the identification of transposable element insertions

David A. Ray
Mark A. Batzer

First Published June 1, 2011

Drosophila" > Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila

Jian Lu
Andrew G. Clark

First Published November 30, 2009

5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

Annette Damert
Julija Raiz
Axel V. Horn
Johannes Löwer
Hui Wang
Jinchuan Xing
Mark A. Batzer
Roswitha Löwer
Gerald G. Schumann

First Published August 3, 2009

Mobile elements create structural variation: Analysis of a complete human genome

Jinchuan Xing
Yuhua Zhang
Kyudong Han
Abdel Halim Salem
Shurjo K. Sen
Chad D. Huff Qiong Zhou
... [+2 authors] ...,
Ewen F. Kirkness
Samuel Levy
Mark A. Batzer
Lynn B. Jorde

First Published May 13, 2009

Darwinian and demographic forces affecting human protein coding genes

Rasmus Nielsen
Melissa J. Hubisz
Ines Hellmann
Dara Torgerson
Aida M. Andrés
Anders Albrechtsen Ryan Gutenkunst Mark D. Adams Michele Cargill
... [+4 authors] ...,
Adam Boyko
Amit Indap
Carlos D. Bustamante
Andrew G. Clark

First Published March 11, 2009

Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

Ines Hellmann
Yuan Mang
Zhiping Gu
Peter Li
Francisco M. de la Vega
Andrew G. Clark
Rasmus Nielsen

First Published April 14, 2008

Monodelphis domestica" > Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

Andrew J. Gentles
Matthew J. Wakefield
Oleksiy Kohany
Wanjun Gu
Mark A. Batzer
David D. Pollock
Jerzy Jurka

First Published May 10, 2007

Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla

Gary M. Wilson
Stephane Flibotte
Perseus I. Missirlis
Marco A. Marra
Steven Jones
Kevin Thornton
Andrew G. Clark
Robert A. Holt

First Published December 19, 2005

Determinants of the success of whole-genome association testing

Andrew G. Clark
Eric Boerwinkle
James Hixson
Charles F. Sing

First Published October 26, 2005

Ascertainment bias in studies of human genome-wide polymorphism

Andrew G. Clark
Melissa J. Hubisz
Carlos D. Bustamante
Scott H. Williamson
Rasmus Nielsen

First Published October 26, 2005

Genomic scans for selective sweeps using SNP data

Rasmus Nielsen
Scott Williamson
Yuseob Kim
Melissa J. Hubisz
Andrew G. Clark
Carlos Bustamante

First Published October 26, 2005

Alu amplification" > Under the genomic radar: The Stealth model of Alu amplification

Kyudong Han
Jinchuan Xing
Hui Wang
Dale J. Hedges
Randall K. Garber
Richard Cordaux
Mark A. Batzer

First Published May 2, 2005

The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern

Francisco M. De La Vega
Hadar Isaac
Andrew Collins
Charles R. Scafe
Bjarni V. Halldórsson
Xiaoping Su Ross A. Lippert Yu Wang Marion Laig-Webster Ryan T. Koehler Janet S. Ziegle Lewis T. Wogan Junko F. Stevens Kyle M. Leinen Sheri J. Olson Karl J. Guegler Xiaoqing You Lily H. Xu Heinz G. Hemken Francis Kalush Mitsuo Itakura Yi Zheng Guy de Thé Stephen J. O'Brien Andrew G. Clark
... [+20 authors] ...,
Sorin Istrail
Michael W. Hunkapiller
Eugene G. Spier
Dennis A. Gilbert

First Published March 21, 2005

Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution" > Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution

Stephen Richards
Yue Liu
Brian R. Bettencourt
Pavel Hradecky
Stan Letovsky
Rasmus Nielsen Kevin Thornton Melissa J. Hubisz Rui Chen Richard P. Meisel Olivier Couronne Sujun Hua Mark A. Smith Peili Zhang Jing Liu Harmen J. Bussemaker Marinus F. van Batenburg Sally L. Howells Steven E. Scherer Erica Sodergren Beverly B. Matthews Madeline A. Crosby Andrew J. Schroeder Daniel Ortiz-Barrientos Catharine M. Rives Michael L. Metzker Donna M. Muzny Graham Scott David Steffen David A. Wheeler Kim C. Worley Paul Havlak K. James Durbin Amy Egan Rachel Gill Jennifer Hume Margaret B. Morgan George Miner Cerissa Hamilton Yanmei Huang Lenée Waldron Daniel Verduzco Kerstin P. Clerc-Blankenburg Inna Dubchak Mohamed A.F. Noor Wyatt Anderson Kevin P. White Andrew G. Clark
... [+43 authors] ...,
Stephen W. Schaeffer
William Gelbart
George M. Weinstock
Richard A. Gibbs

First Published January 3, 2005

Optimal Haplotype Block-Free Selection of Tagging SNPs for Genome-Wide Association Studies

Bjarni V. Halldórsson
Vineet Bafna
Ross Lippert
Russell Schwartz
Francisco M. De La Vega
Andrew G. Clark
Sorin Istrail

First Published August 2, 2004

Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages" > Differential Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages

Dale J. Hedges
Pauline A. Callinan
Richard Cordaux
Jinchuan Xing
Erin Barnes
Mark A. Batzer

First Published June 1, 2004

Alu Insertion Polymorphisms" > Genetic Variation Among World Populations: Inferences From 100 Alu Insertion Polymorphisms

W. Scott Watkins
Alan R. Rogers
Christopher T. Ostler
Steve Wooding
Michael J. Bamshad
Anna-Marie E. Brassington Marion L. Carroll Son V. Nguyen Jerilyn A. Walker B.V. Ravi Prasad
... [+5 authors] ...,
P. Govinda Reddy
Pradipta K. Das
Mark A. Batzer
Lynn B. Jorde

First Published June 12, 2003

Y Chromosome STR Haplotypes and the Genetic Structure of U.S. Populations of African, European, and Hispanic Ancestry

Manfred Kayser
Silke Brauer
Hiltrud Schädlich
Mechthild Prinz
Mark A. Batzer
Peter A. Zimmerman
B. A. Boatin
Mark Stoneking

First Published April 1, 2003

Mammalian Retroelements

Prescott L. Deininger
Mark A. Batzer

First Published October 1, 2002

Active Alu Element “A-Tails”: Size Does Matter

Astrid M. Roy-Engel
Abdel-Halim Salem
Oluwatosin O. Oyeniran
Lisa Deininger
Dale J. Hedges
Gail E. Kilroy
Mark A. Batzer
Prescott L. Deininger

First Published August 21, 2002

Patterns of Human Diversity, within and among Continents, Inferred from Biallelic DNA Polymorphisms

Chiara Romualdi
David Balding
Ivane S. Nasidze
Gregory Risch
Myles Robichaux
Stephen T. Sherry
Mark Stoneking
Mark A. Batzer
Guido Barbujani

First Published April 1, 2002

The Search for Meaning in Noncoding DNA

Andrew G. Clark

First Published August 1, 2001

Genetic Evidence on the Origins of Indian Caste Populations

Michael Bamshad
Toomas Kivisild
W. Scott Watkins
Mary E. Dixon
Chris E. Ricker
Baskara B. Rao J. Mastan Naidu B.V. Ravi Prasad P. Govinda Reddy Arani Rasanayagam Surinder S. Papiha Richard Villems Alan J. Redd Michael F. Hammer
... [+9 authors] ...,
Son V. Nguyen
Marion L. Carroll
Mark A. Batzer
Lynn B. Jorde

First Published May 8, 2001

Potential Gene Conversion and Source Genes for Recently Integrated Alu Elements

Astrid M. Roy
Marion L. Carroll
Son V. Nguyen
Abdel-Halim Salem
Michael Oldridge
Andrew O. M. Wilkie
Mark A. Batzer
Prescott L. Deininger

First Published October 1, 2000

Reading between the LINEs: Human Genomic Variation Induced by LINE-1 Retrotransposition

Fang-miin Sheen
Stephen T. Sherry
Gregory M. Risch
Myles Robichaux
Ivane Nasidze
Mark Stoneking
Mark A. Batzer
Gary D. Swergold

First Published October 1, 2000

Sequence Diversity and Large-Scale Typing of SNPs in the Human Apolipoprotein E Gene

Deborah A. Nickerson
Scott L. Taylor
Stephanie M. Fullerton
Kenneth M. Weiss
Andrew G. Clark
Jari H. Stengård
Veikko Salomaa
Eric Boerwinkle
Charles F. Sing

First Published October 1, 2000

AluInsertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa " > AluInsertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa

Mark Stoneking
Jennifer J. Fontius
Stephanie L. Clifford
Himla Soodyall
Santosh S. Arcot
Nilmani Saha
... [+1 authors] ...,
Trefor Jenkins
Mohammad A. Tahir
Prescott L. Deininger
Mark A. Batzer

First Published November 1, 1997

Modeling Human Evolution—To Tree or Not to Tree?

Stephen T. Sherry
Mark A. Batzer

First Published October 1, 1997