Search | Genome Research

Drosophila melanogaster ovary" > Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary

Satyam P. Srivastav
Cédric Feschotte
Andrew G. Clark

First Published May 15, 2024

Benchmarking small-variant genotyping in polyploids

Daniel P. Cooke
David C. Wedge
Gerton Lunter

First Published December 29, 2021

Drosophila" > Evidence for the fixation of gene duplications by positive selection in Drosophila

Margarida Cardoso-Moreira
J. Roman Arguello
Srikanth Gottipati
L.G. Harshman
Jennifer K. Grenier
Andrew G. Clark

First Published April 12, 2016

Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations

Juan L. Rodriguez-Flores
Khalid Fakhro
Francisco Agosto-Perez
Monica D. Ramstetter
Leonardo Arbiza
Thomas L. Vincent Amal Robay Joel A. Malek Karsten Suhre Lotfi Chouchane Ramin Badii Ajayeb Al-Nabet Al-Marri Charbel Abi Khalil Mahmoud Zirie Amin Jayyousi Jacqueline Salit
... [+11 authors] ...,
Alon Keinan
Andrew G. Clark
Ronald G. Crystal
Jason G. Mezey

First Published January 4, 2016

Monodelphis domestica" > Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica

Xu Wang
Kory C. Douglas
John L. VandeBerg
Andrew G. Clark
Paul B. Samollow

First Published September 24, 2013

Drosophila genomes" > Efficient identification of Y chromosome sequences in the human and Drosophila genomes

Antonio Bernardo Carvalho
Andrew G. Clark

First Published August 6, 2013

The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes

Stephen B. Montgomery
David L. Goode
Erika Kvikstad
Cornelis A. Albers
Zhengdong D. Zhang
Xinmeng Jasmine Mu Guruprasad Ananda Bryan Howie Konrad J. Karczewski Kevin S. Smith Vanessa Anaya Rhea Richardson Joe Davis Daniel G. MacArthur Arend Sidow Laurent Duret Mark Gerstein
... [+12 authors] ...,
Kateryna D. Makova
Jonathan Marchini
Gil McVean
Gerton Lunter

First Published March 11, 2013

Random X inactivation in the mule and horse placenta

Xu Wang
Donald C. Miller
Andrew G. Clark
Douglas F. Antczak

First Published May 29, 2012

Drosophila simulans clade" > Genome sequencing reveals complex speciation in the Drosophila simulans clade

Daniel Garrigan
Sarah B. Kingan
Anthony J. Geneva
Peter Andolfatto
Andrew G. Clark
Kevin R. Thornton
Daven C. Presgraves

First Published April 13, 2012

Disentangling the relationship between sex-biased gene expression and X-linkage

Richard P. Meisel
John H. Malone
Andrew G. Clark

First Published April 12, 2012

Impact of microRNA regulation on variation in human gene expression

Jian Lu
Andrew G. Clark

First Published March 28, 2012

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

Gerton Lunter
Martin Goodson

First Published October 27, 2010

Dindel: Accurate indel calls from short-read data

Cornelis A. Albers
Gerton Lunter
Daniel G. MacArthur
Gilean McVean
Willem H. Ouwehand
Richard Durbin

First Published October 27, 2010

Massive turnover of functional sequence in human and other mammalian genomes

Stephen Meader
Chris P. Ponting
Gerton Lunter

First Published August 6, 2010

Genome assembly quality: Assessment and improvement using the neutral indel model

Stephen Meader
LaDeana W. Hillier
Devin Locke
Chris P. Ponting
Gerton Lunter

First Published March 19, 2010

Drosophila" > Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila

Jian Lu
Andrew G. Clark

First Published November 30, 2009

Darwinian and demographic forces affecting human protein coding genes

Rasmus Nielsen
Melissa J. Hubisz
Ines Hellmann
Dara Torgerson
Aida M. Andrés
Anders Albrechtsen Ryan Gutenkunst Mark D. Adams Michele Cargill
... [+4 authors] ...,
Adam Boyko
Amit Indap
Carlos D. Bustamante
Andrew G. Clark

First Published March 11, 2009

Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

Ines Hellmann
Yuan Mang
Zhiping Gu
Peter Li
Francisco M. de la Vega
Andrew G. Clark
Rasmus Nielsen

First Published April 14, 2008

Uncertainty in homology inferences: Assessing and improving genomic sequence alignment

Gerton Lunter
Andrea Rocco
Naila Mimouni
Andreas Heger
Alexandre Caldeira
Jotun Hein

First Published December 11, 2007

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

Jasmina Ponjavic
Chris P. Ponting
Gerton Lunter

First Published March 26, 2007

Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla

Gary M. Wilson
Stephane Flibotte
Perseus I. Missirlis
Marco A. Marra
Steven Jones
Kevin Thornton
Andrew G. Clark
Robert A. Holt

First Published December 19, 2005

Determinants of the success of whole-genome association testing

Andrew G. Clark
Eric Boerwinkle
James Hixson
Charles F. Sing

First Published October 26, 2005

Ascertainment bias in studies of human genome-wide polymorphism

Andrew G. Clark
Melissa J. Hubisz
Carlos D. Bustamante
Scott H. Williamson
Rasmus Nielsen

First Published October 26, 2005

Genomic scans for selective sweeps using SNP data

Rasmus Nielsen
Scott Williamson
Yuseob Kim
Melissa J. Hubisz
Andrew G. Clark
Carlos Bustamante

First Published October 26, 2005

The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern

Francisco M. De La Vega
Hadar Isaac
Andrew Collins
Charles R. Scafe
Bjarni V. Halldórsson
Xiaoping Su Ross A. Lippert Yu Wang Marion Laig-Webster Ryan T. Koehler Janet S. Ziegle Lewis T. Wogan Junko F. Stevens Kyle M. Leinen Sheri J. Olson Karl J. Guegler Xiaoqing You Lily H. Xu Heinz G. Hemken Francis Kalush Mitsuo Itakura Yi Zheng Guy de Thé Stephen J. O'Brien Andrew G. Clark
... [+20 authors] ...,
Sorin Istrail
Michael W. Hunkapiller
Eugene G. Spier
Dennis A. Gilbert

First Published March 21, 2005

Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution" > Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution

Stephen Richards
Yue Liu
Brian R. Bettencourt
Pavel Hradecky
Stan Letovsky
Rasmus Nielsen Kevin Thornton Melissa J. Hubisz Rui Chen Richard P. Meisel Olivier Couronne Sujun Hua Mark A. Smith Peili Zhang Jing Liu Harmen J. Bussemaker Marinus F. van Batenburg Sally L. Howells Steven E. Scherer Erica Sodergren Beverly B. Matthews Madeline A. Crosby Andrew J. Schroeder Daniel Ortiz-Barrientos Catharine M. Rives Michael L. Metzker Donna M. Muzny Graham Scott David Steffen David A. Wheeler Kim C. Worley Paul Havlak K. James Durbin Amy Egan Rachel Gill Jennifer Hume Margaret B. Morgan George Miner Cerissa Hamilton Yanmei Huang Lenée Waldron Daniel Verduzco Kerstin P. Clerc-Blankenburg Inna Dubchak Mohamed A.F. Noor Wyatt Anderson Kevin P. White Andrew G. Clark
... [+43 authors] ...,
Stephen W. Schaeffer
William Gelbart
George M. Weinstock
Richard A. Gibbs

First Published January 3, 2005

Optimal Haplotype Block-Free Selection of Tagging SNPs for Genome-Wide Association Studies

Bjarni V. Halldórsson
Vineet Bafna
Ross Lippert
Russell Schwartz
Francisco M. De La Vega
Andrew G. Clark
Sorin Istrail

First Published August 2, 2004

The Search for Meaning in Noncoding DNA

Andrew G. Clark

First Published August 1, 2001

Sequence Diversity and Large-Scale Typing of SNPs in the Human Apolipoprotein E Gene

Deborah A. Nickerson
Scott L. Taylor
Stephanie M. Fullerton
Kenneth M. Weiss
Andrew G. Clark
Jari H. Stengård
Veikko Salomaa
Eric Boerwinkle
Charles F. Sing

First Published October 1, 2000

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Your search for returned 29 results

Drosophila melanogaster ovary" > Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary

Benchmarking small-variant genotyping in polyploids

Drosophila" > Evidence for the fixation of gene duplications by positive selection in Drosophila

Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations

Monodelphis domestica" > Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica

Drosophila genomes" > Efficient identification of Y chromosome sequences in the human and Drosophila genomes

The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes

Random X inactivation in the mule and horse placenta

Drosophila simulans clade" > Genome sequencing reveals complex speciation in the Drosophila simulans clade

Disentangling the relationship between sex-biased gene expression and X-linkage

Impact of microRNA regulation on variation in human gene expression

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

Dindel: Accurate indel calls from short-read data

Massive turnover of functional sequence in human and other mammalian genomes

Genome assembly quality: Assessment and improvement using the neutral indel model

Drosophila" > Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila

Darwinian and demographic forces affecting human protein coding genes

Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

Uncertainty in homology inferences: Assessing and improving genomic sequence alignment

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla

Determinants of the success of whole-genome association testing

Ascertainment bias in studies of human genome-wide polymorphism

Genomic scans for selective sweeps using SNP data

The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern

Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution" > Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution

Optimal Haplotype Block-Free Selection of Tagging SNPs for Genome-Wide Association Studies

The Search for Meaning in Noncoding DNA

Sequence Diversity and Large-Scale Typing of SNPs in the Human Apolipoprotein E Gene

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Your search for returned 29 results