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Your search for returned 29 results

Resource

The PanOryza pangene catalog of Asian cultivated rice

Bruno Contreras-Moreira
Eshan Sharma
Shradha Saraf
Guy Naamati
Parul Gupta
Justin Elser Dmytro Chebotarov Kapeel Chougule Zhenyuan Lu Sharon Wei Andrew Olson Ian Tsang Disha Lodha Yong Zhou Zhichao Yu Wen Zhao Jianwei Zhang Sandeep Amberkar Kawinnat Sue-Ob Zhi Sun Maria Martin Kenneth L. McNally Doreen Ware Eric W. Deutsch Dario Copetti
... [+20 authors] ...,
Rod A. Wing
Pankaj Jaiswal
Sarah Dyer
Andrew R. Jones

First Published December 12, 2025

Method

Gapless assembly of complete human and plant chromosomes using only nanopore sequencing

Sergey Koren
Zhigui Bao
Andrea Guarracino
Shujun Ou
Sara Goodwin
Katharine M. Jenike Julian Lucas Brandy McNulty Jimin Park Mikko Rautiainen Arang Rhie Dick Roelofs Harrie Schneiders Ilse Vrijenhoek Koen Nijbroek Olle Nordesjo Sergey Nurk Mike Vella Katherine R. Lawrence Doreen Ware Michael C. Schatz Erik Garrison Sanwen Huang
... [+18 authors] ...,
William Richard McCombie
Karen H. Miga
Alexander H.J. Wittenberg
Adam M. Phillippy

First Published November 6, 2024

Research

Drosophila melanogaster ovary" > Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary

Satyam P. Srivastav
Cédric Feschotte
Andrew G. Clark

First Published May 15, 2024

Research

A high-resolution gene expression atlas links dedicated meristem genes to key architectural traits

Steffen Knauer
Marie Javelle
Lin Li
Xianran Li
Xiaoli Ma
Kokulapalan Wimalanathan Sunita Kumari Robyn Johnston Samuel Leiboff Robert Meeley Patrick S. Schnable Doreen Ware Carolyn Lawrence-Dill
... [+8 authors] ...,
Jianming Yu
Gary J. Muehlbauer
Michael J. Scanlon
Marja C.P. Timmermans

First Published November 19, 2019

Resource

A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing

Bo Wang
Michael Regulski
Elizabeth Tseng
Andrew Olson
Sara Goodwin
W. Richard McCombie
Doreen Ware

First Published April 30, 2018

Research

Drosophila" > Evidence for the fixation of gene duplications by positive selection in Drosophila

Margarida Cardoso-Moreira
J. Roman Arguello
Srikanth Gottipati
L.G. Harshman
Jennifer K. Grenier
Andrew G. Clark

First Published April 12, 2016

Research

Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations

Juan L. Rodriguez-Flores
Khalid Fakhro
Francisco Agosto-Perez
Monica D. Ramstetter
Leonardo Arbiza
Thomas L. Vincent Amal Robay Joel A. Malek Karsten Suhre Lotfi Chouchane Ramin Badii Ajayeb Al-Nabet Al-Marri Charbel Abi Khalil Mahmoud Zirie Amin Jayyousi Jacqueline Salit
... [+11 authors] ...,
Alon Keinan
Andrew G. Clark
Ronald G. Crystal
Jason G. Mezey

First Published January 4, 2016

Research

Regulatory modules controlling maize inflorescence architecture

Andrea L. Eveland
Alexander Goldshmidt
Michael Pautler
Kengo Morohashi
Christophe Liseron-Monfils
Michael W. Lewis Sunita Kumari Susumu Hiraga Fang Yang Erica Unger-Wallace Andrew Olson Sarah Hake
... [+7 authors] ...,
Erik Vollbrecht
Erich Grotewold
Doreen Ware
David Jackson

First Published December 4, 2013

Research

Monodelphis domestica" > Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica

Xu Wang
Kory C. Douglas
John L. VandeBerg
Andrew G. Clark
Paul B. Samollow

First Published September 24, 2013

Research

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA

Michael Regulski
Zhenyuan Lu
Jude Kendall
Mark T.A. Donoghue
Jon Reinders
Victor Llaca Stephane Deschamps Andrew Smith Dan Levy W. Richard McCombie Scott Tingey
... [+6 authors] ...,
Antoni Rafalski
James Hicks
Doreen Ware
Robert A. Martienssen

First Published June 5, 2013

Research

Random X inactivation in the mule and horse placenta

Xu Wang
Donald C. Miller
Andrew G. Clark
Douglas F. Antczak

First Published May 29, 2012

Research

Drosophila simulans clade" > Genome sequencing reveals complex speciation in the Drosophila simulans clade

Daniel Garrigan
Sarah B. Kingan
Anthony J. Geneva
Peter Andolfatto
Andrew G. Clark
Kevin R. Thornton
Daven C. Presgraves

First Published April 13, 2012

Research

Disentangling the relationship between sex-biased gene expression and X-linkage

Richard P. Meisel
John H. Malone
Andrew G. Clark

First Published April 12, 2012

Research

Impact of microRNA regulation on variation in human gene expression

Jian Lu
Andrew G. Clark

First Published March 28, 2012

Research

Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

Ruth A. Swanson-Wagner
Steven R. Eichten
Sunita Kumari
Peter Tiffin
Joshua C. Stein
Doreen Ware
Nathan M. Springer

First Published October 29, 2010

Letter

Drosophila" > Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila

Jian Lu
Andrew G. Clark

First Published November 30, 2009

Resource

Evidence-based gene predictions in plant genomes

Chengzhi Liang
Long Mao
Doreen Ware
Lincoln Stein

First Published June 18, 2009

Letter

Darwinian and demographic forces affecting human protein coding genes

Rasmus Nielsen
Melissa J. Hubisz
Ines Hellmann
Dara Torgerson
Aida M. Andrés
Anders Albrechtsen Ryan Gutenkunst Mark D. Adams Michele Cargill
... [+4 authors] ...,
Adam Boyko
Amit Indap
Carlos D. Bustamante
Andrew G. Clark

First Published March 11, 2009

LETTER

Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

Ines Hellmann
Yuan Mang
Zhiping Gu
Peter Li
Francisco M. de la Vega
Andrew G. Clark
Rasmus Nielsen

First Published April 14, 2008

LETTER

Arabidopsis microRNA families through duplication events" > Evolution of Arabidopsis microRNA families through duplication events

Christopher Maher
Lincoln Stein
Doreen Ware

First Published March 6, 2006

LETTER

Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla

Gary M. Wilson
Stephane Flibotte
Perseus I. Missirlis
Marco A. Marra
Steven Jones
Kevin Thornton
Andrew G. Clark
Robert A. Holt

First Published December 19, 2005

Methods

Genomic scans for selective sweeps using SNP data

Rasmus Nielsen
Scott Williamson
Yuseob Kim
Melissa J. Hubisz
Andrew G. Clark
Carlos Bustamante

First Published October 26, 2005

PERSPECTIVE

Determinants of the success of whole-genome association testing

Andrew G. Clark
Eric Boerwinkle
James Hixson
Charles F. Sing

First Published October 26, 2005

LETTER

Ascertainment bias in studies of human genome-wide polymorphism

Andrew G. Clark
Melissa J. Hubisz
Carlos D. Bustamante
Scott H. Williamson
Rasmus Nielsen

First Published October 26, 2005

ARTICLE

The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern

Francisco M. De La Vega
Hadar Isaac
Andrew Collins
Charles R. Scafe
Bjarni V. Halldórsson
Xiaoping Su Ross A. Lippert Yu Wang Marion Laig-Webster Ryan T. Koehler Janet S. Ziegle Lewis T. Wogan Junko F. Stevens Kyle M. Leinen Sheri J. Olson Karl J. Guegler Xiaoqing You Lily H. Xu Heinz G. Hemken Francis Kalush Mitsuo Itakura Yi Zheng Guy de Thé Stephen J. O'Brien Andrew G. Clark
... [+20 authors] ...,
Sorin Istrail
Michael W. Hunkapiller
Eugene G. Spier
Dennis A. Gilbert

First Published March 21, 2005

ARTICLE

Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution" > Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution

Stephen Richards
Yue Liu
Brian R. Bettencourt
Pavel Hradecky
Stan Letovsky
Rasmus Nielsen Kevin Thornton Melissa J. Hubisz Rui Chen Richard P. Meisel Olivier Couronne Sujun Hua Mark A. Smith Peili Zhang Jing Liu Harmen J. Bussemaker Marinus F. van Batenburg Sally L. Howells Steven E. Scherer Erica Sodergren Beverly B. Matthews Madeline A. Crosby Andrew J. Schroeder Daniel Ortiz-Barrientos Catharine M. Rives Michael L. Metzker Donna M. Muzny Graham Scott David Steffen David A. Wheeler Kim C. Worley Paul Havlak K. James Durbin Amy Egan Rachel Gill Jennifer Hume Margaret B. Morgan George Miner Cerissa Hamilton Yanmei Huang Lenée Waldron Daniel Verduzco Kerstin P. Clerc-Blankenburg Inna Dubchak Mohamed A.F. Noor Wyatt Anderson Kevin P. White Andrew G. Clark
... [+43 authors] ...,
Stephen W. Schaeffer
William Gelbart
George M. Weinstock
Richard A. Gibbs

First Published January 3, 2005

Methods

Optimal Haplotype Block-Free Selection of Tagging SNPs for Genome-Wide Association Studies

Bjarni V. Halldórsson
Vineet Bafna
Ross Lippert
Russell Schwartz
Francisco M. De La Vega
Andrew G. Clark
Sorin Istrail

First Published August 2, 2004

INSIGHT/OUTLOOK

The Search for Meaning in Noncoding DNA

Andrew G. Clark

First Published August 1, 2001

LETTER

Sequence Diversity and Large-Scale Typing of SNPs in the Human Apolipoprotein E Gene

Deborah A. Nickerson
Scott L. Taylor
Stephanie M. Fullerton
Kenneth M. Weiss
Andrew G. Clark
Jari H. Stengård
Veikko Salomaa
Eric Boerwinkle
Charles F. Sing

First Published October 1, 2000