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Research

Single-cell spatial transcriptomics reveals a dystrophic trajectory following a developmental bifurcation of myoblast cell fates in facioscapulohumeral muscular dystrophy

Lujia Chen
Xiangduo Kong
Kevin G. Johnston
Ali Mortazavi
Todd C. Holmes
Zhiqun Tan
Kyoko Yokomori
Xiangmin Xu

First Published May 22, 2024

Resource

Integration of high-resolution promoter profiling assays reveals novel, cell type–specific transcription start sites across 115 human cell and tissue types

Jill E. Moore
Xiao-Ou Zhang
Shaimae I. Elhajjajy
Kaili Fan
Henry E. Pratt
Fairlie Reese
Ali Mortazavi
Zhiping Weng

First Published December 23, 2021

Resource

Dynamics of microRNA expression during mouse prenatal development

Sorena Rahmanian
Rabi Murad
Alessandra Breschi
Weihua Zeng
Mark Mackiewicz
Brian Williams Carrie A. Davis Brian Roberts Sarah Meadows Dianna Moore Diane Trout Chris Zaleski Alex Dobin Lei-Hoon Sei Jorg Drenkow Alex Scavelli Thomas R. Gingeras
... [+12 authors] ...,
Barbara J. Wold
Richard M. Myers
Roderic Guigó
Ali Mortazavi

First Published October 23, 2019

Corrigendum

Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

Manuel Tardaguila
Lorena de la Fuente
Cristina Marti
Cécile Pereira
Francisco Jose Pardo-Palacios
Hector del Risco Marc Ferrell Maravillas Mellado Marissa Macchietto Kenneth Verheggen Mariola Edelmann Iakes Ezkurdia Jesus Vazquez Michael Tress Ali Mortazavi
... [+10 authors] ...,
Lennart Martens
Susana Rodriguez-Navarro
Victoria Moreno-Manzano
Ana Conesa

First Published July 2, 2018

Method

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

Manuel Tardaguila
Lorena de la Fuente
Cristina Marti
Cécile Pereira
Francisco Jose Pardo-Palacios
Hector del Risco Marc Ferrell Maravillas Mellado Marissa Macchietto Kenneth Verheggen Mariola Edelmann Iakes Ezkurdia Jesus Vazquez Michael Tress Ali Mortazavi
... [+10 authors] ...,
Lennart Martens
Susana Rodriguez-Navarro
Victoria Moreno-Manzano
Ana Conesa

First Published February 9, 2018

Research

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

Myungjin Jo
Ah Young Chung
Nozomu Yachie
Minchul Seo
Hyejin Jeon
Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
... [+4 authors] ...,
Marc Vidal
Hae Chul Park
Frederick P. Roth
Kyoungho Suk

First Published June 8, 2017

Method

An extended set of yeast-based functional assays accurately identifies human disease mutations

Song Sun
Fan Yang
Guihong Tan
Michael Costanzo
Rose Oughtred
Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
... [+10 authors] ...,
Brenda J. Andrews
Charles Boone
Kara Dolinski
Frederick P. Roth

First Published March 14, 2016

Resource

Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps

Ali Mortazavi
Shirley Pepke
Camden Jansen
Georgi K. Marinov
Jason Ernst
Manolis Kellis
Ross C. Hardison
Richard M. Myers
Barbara J. Wold

First Published October 29, 2013

Research

RNA editing in the human ENCODE RNA-seq data

Eddie Park
Brian Williams
Barbara J. Wold
Ali Mortazavi

First Published September 5, 2012

Research

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression

Timothy E. Reddy
Jason Gertz
Florencia Pauli
Katerina S. Kucera
Katherine E. Varley
Kimberly M. Newberry Georgi K. Marinov Ali Mortazavi Brian A. Williams Lingyun Song
... [+5 authors] ...,
Gregory E. Crawford
Barbara Wold
Huntington F. Willard
Richard M. Myers

First Published February 2, 2012

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