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Method

Multiplexed long-read plasmid validation and analysis using OnRamp

  • Camille Mumm
  • Melissa L. Drexel
  • Torrin L. McDonald
  • Adam G. Diehl
  • Jessica A. Switzenberg
  • Alan P. Boyle
  • First Published May 8, 2023
Method

TRACE: transcription factor footprinting using chromatin accessibility data and DNA sequence

  • Ningxin Ouyang
  • Alan P. Boyle
  • First Published July 6, 2020
Method

MHC haplotypes reveal extreme coding variation in genes other than highly polymorphic HLA class I and II" > Sequences of 95 human MHC haplotypes reveal extreme coding variation in genes other than highly polymorphic HLA class I and II

  • Paul J. Norman
  • Steven J. Norberg
  • Lisbeth A. Guethlein
  • Neda Nemat-Gorgani
  • Thomas Royce
  • Emily E. Wroblewski Tamsen Dunn Tobias Mann Claudia Alicata Jill A. Hollenbach Weihua Chang Melissa Shults Won
  • ... [+7 authors] ...,
  • Kevin L. Gunderson
  • Laurent Abi-Rached
  • Mostafa Ronaghi
  • Peter Parham
  • First Published March 30, 2017
Resource

Annotation of functional variation in personal genomes using RegulomeDB

  • Alan P. Boyle
  • Eurie L. Hong
  • Manoj Hariharan
  • Yong Cheng
  • Marc A. Schaub
  • Maya Kasowski Konrad J. Karczewski Julie Park
  • ... [+3 authors] ...,
  • Benjamin C. Hitz
  • Shuai Weng
  • J. Michael Cherry
  • Michael Snyder
  • First Published September 5, 2012
Method

Linking disease associations with regulatory information in the human genome

  • Marc A. Schaub
  • Alan P. Boyle
  • Anshul Kundaje
  • Serafim Batzoglou
  • Michael Snyder
  • First Published September 5, 2012
Resource

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

  • Lingyun Song
  • Zhancheng Zhang
  • Linda L. Grasfeder
  • Alan P. Boyle
  • Paul G. Giresi
  • Bum-Kyu Lee Nathan C. Sheffield Stefan Gräf Mikael Huss Damian Keefe Zheng Liu Darin London Ryan M. McDaniell Yoichiro Shibata Kimberly A. Showers Jeremy M. Simon Teresa Vales Tianyuan Wang Deborah Winter Zhuzhu Zhang Neil D. Clarke Ewan Birney
  • ... [+17 authors] ...,
  • Vishwanath R. Iyer
  • Gregory E. Crawford
  • Jason D. Lieb
  • Terrence S. Furey
  • First Published July 12, 2011
Method

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

  • Alan P. Boyle
  • Lingyun Song
  • Bum-Kyu Lee
  • Darin London
  • Damian Keefe
  • Ewan Birney
  • Vishwanath R. Iyer
  • Gregory E. Crawford
  • Terrence S. Furey
  • First Published November 24, 2010
Article

Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes

  • Paul J. Norman
  • Laurent Abi-Rached
  • Ketevan Gendzekhadze
  • John A. Hammond
  • Achim K. Moesta
  • Deepti Sharma Thorsten Graef Karina L. McQueen Lisbeth A. Guethlein Christine V.F. Carrington Dasdayanee Chandanayingyong Yih-Hsin Chang Catalina Crespí Güher Saruhan-Direskeneli Kamran Hameed Giorgi Kamkamidze Kwadwo A. Koram Zulay Layrisse Nuria Matamoros Joan Milà Myoung Hee Park Ramasamy M. Pitchappan D. Dan Ramdath Ming-Yuh Shiau Henry A.F. Stephens Siske Struik Dolly Tyan David H. Verity Robert W. Vaughan Ronald W. Davis
  • ... [+25 authors] ...,
  • Patricia A. Fraser
  • Eleanor M. Riley
  • Mostafa Ronaghi
  • Peter Parham
  • First Published May 1, 2009
LETTER

KIR) loci in primates" > Single haplotype analysis demonstrates rapid evolution of the killer immunoglobulin-like receptor (KIR) loci in primates

  • Jennifer G. Sambrook
  • Arman Bashirova
  • Sophie Palmer
  • Sarah Sims
  • John Trowsdale
  • Laurent Abi-Rached
  • Peter Parham
  • Mary Carrington
  • Stephan Beck
  • First Published January 3, 2005
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