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Resource

The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond

Simon Bray
John Chilton
Matthias Bernt
Nicola Soranzo
Marius van den Beek
Bérénice Batut Helena Rasche
... [+2 authors] ...,
Martin Čech
Peter J.A. Cock
Björn Grüning
Anton Nekrutenko

First Published February 24, 2023

Research

RNA–DNA differences in human mitochondria restore ancestral form of 16S ribosomal RNA

Dan Bar-Yaacov
Gal Avital
Liron Levin
Allison L. Richards
Naomi Hachen
Boris Rebolledo Jaramillo
Anton Nekrutenko
Raz Zarivach
Dan Mishmar

First Published August 2, 2013

Resource

Windshield splatter analysis with the Galaxy metagenomic pipeline

Sergei Kosakovsky Pond
Samir Wadhawan
Francesca Chiaromonte
Guruprasad Ananda
Wen-Yu Chung
James Taylor
Anton Nekrutenko

First Published October 9, 2009

RESOURCE

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

Webb Miller
Kate Rosenbloom
Ross C. Hardison
Minmei Hou
James Taylor
Brian Raney Richard Burhans David C. King Robert Baertsch Daniel Blankenberg Sergei L. Kosakovsky Pond Anton Nekrutenko Belinda Giardine Robert S. Harris Svitlana Tyekucheva Mark Diekhans Thomas H. Pringle William J. Murphy Arthur Lesk George M. Weinstock Kerstin Lindblad-Toh Richard A. Gibbs
... [+17 authors] ...,
Eric S. Lander
Adam Siepel
David Haussler
W. James Kent

First Published November 5, 2007

RESOURCE

A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly

Daniel Blankenberg
James Taylor
Ian Schenck
Jianbin He
Yi Zhang
Matthew Ghent Narayanan Veeraraghavan Istvan Albert
... [+3 authors] ...,
Webb Miller
Kateryna D. Makova
Ross C. Hardison
Anton Nekrutenko

First Published June 13, 2007

RESOURCE

Galaxy: A platform for interactive large-scale genome analysis

Belinda Giardine
Cathy Riemer
Ross C. Hardison
Richard Burhans
Laura Elnitski
Prachi Shah Yi Zhang Daniel Blankenberg Istvan Albert
... [+4 authors] ...,
James Taylor
Webb Miller
W. James Kent
Anton Nekrutenko

First Published September 16, 2005

RESOURCE

1-Mb Resolution Array-Based Comparative Genomic Hybridization Using a BAC Clone Set Optimized for Cancer Gene Analysis

Joel Greshock
Tara L. Naylor
Adam Margolin
Sharon Diskin
Stephen H. Cleaver
P. Andrew Futreal
... [+1 authors] ...,
Pieter J. deJong
Shaying Zhao
Michael Liebman
Barbara L. Weber

First Published December 12, 2003

LETTER

Signatures of Domain Shuffling in the Human Genome

Henrik Kaessmann
Sebastian Zöllner
Anton Nekrutenko
Wen-Hsiung Li

First Published November 1, 2002

METHODS

K _A/K _S Ratio Test for Assessing the Protein-Coding Potential of Genomic Regions: An Empirical and Simulation Study" > The K _A/K _S Ratio Test for Assessing the Protein-Coding Potential of Genomic Regions: An Empirical and Simulation Study

Anton Nekrutenko
Kateryna D. Makova
Wen-Hsiung Li

First Published December 14, 2001

LETTER

Assessment of Compositional Heterogeneity Within and Between Eukaryotic Genomes

Anton Nekrutenko
Wen-Hsiung Li

First Published December 1, 2000