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Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise

  • Aliza B. Rubenstein
  • Gregory R. Smith
  • Zidong Zhang
  • Xi Chen
  • Toby L. Chambers
  • Frederique Ruf-Zamojski Natalia Mendelev Wan Sze Cheng Michel Zamojski Mary Anne S. Amper Venugopalan D. Nair Andrew R. Marderstein Stephen B. Montgomery Olga G. Troyanskaya
  • ... [+9 authors] ...,
  • Elena Zaslavsky
  • Todd Trappe
  • Scott Trappe
  • Stuart C. Sealfon
  • First Published May 20, 2025
Resource

Global compositional and functional states of the human gut microbiome in health and disease

  • Sunjae Lee
  • Theo Portlock
  • Emmanuelle Le Chatelier
  • Fernando Garcia-Guevara
  • Frederick Clasen
  • Florian Plaza Oñate Nicolas Pons Neelu Begum Azadeh Harzandi Ceri Proffitt Dorines Rosario Stefania Vaga Junseok Park Kalle von Feilitzen Fredric Johansson Cheng Zhang Lindsey A. Edwards Vincent Lombard Franck Gauthier Claire J. Steves David Gomez-Cabrero Bernard Henrissat Doheon Lee Lars Engstrand Debbie L. Shawcross Gordon Proctor Mathieu Almeida Jens Nielsen Adil Mardinoglu
  • ... [+24 authors] ...,
  • David L. Moyes
  • Stanislav Dusko Ehrlich
  • Mathias Uhlen
  • Saeed Shoaie
  • First Published July 22, 2024
Resource

Modeling transcriptional regulation of model species with deep learning

  • Evan M. Cofer
  • João Raimundo
  • Alicja Tadych
  • Yuji Yamazaki
  • Aaron K. Wong
  • Chandra L. Theesfeld
  • Michael S. Levine
  • Olga G. Troyanskaya
  • First Published April 22, 2021
Resource

Modeling molecular development of breast cancer in canine mammary tumors

  • Kiley Graim
  • Dmitriy Gorenshteyn
  • David G. Robinson
  • Nicholas J. Carriero
  • James A. Cahill
  • Rumela Chakrabarti Michael H. Goldschmidt Amy C. Durham Julien Funk John D. Storey
  • ... [+5 authors] ...,
  • Vessela N. Kristensen
  • Chandra L. Theesfeld
  • Karin U. Sorenmo
  • Olga G. Troyanskaya
  • First Published December 23, 2020
Resource

Exploring the human genome with functional maps

  • Curtis Huttenhower
  • Erin M. Haley
  • Matthew A. Hibbs
  • Vanessa Dumeaux
  • Daniel R. Barrett
  • Hilary A. Coller
  • Olga G. Troyanskaya
  • First Published February 26, 2009
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