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Resource

Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise

Aliza B. Rubenstein
Gregory R. Smith
Zidong Zhang
Xi Chen
Toby L. Chambers
Frederique Ruf-Zamojski Natalia Mendelev Wan Sze Cheng Michel Zamojski Mary Anne S. Amper Venugopalan D. Nair Andrew R. Marderstein Stephen B. Montgomery Olga G. Troyanskaya
... [+9 authors] ...,
Elena Zaslavsky
Todd Trappe
Scott Trappe
Stuart C. Sealfon

First Published May 20, 2025

Resource

Modeling transcriptional regulation of model species with deep learning

Evan M. Cofer
João Raimundo
Alicja Tadych
Yuji Yamazaki
Aaron K. Wong
Chandra L. Theesfeld
Michael S. Levine
Olga G. Troyanskaya

First Published April 22, 2021

Resource

Modeling molecular development of breast cancer in canine mammary tumors

Kiley Graim
Dmitriy Gorenshteyn
David G. Robinson
Nicholas J. Carriero
James A. Cahill
Rumela Chakrabarti Michael H. Goldschmidt Amy C. Durham Julien Funk John D. Storey
... [+5 authors] ...,
Vessela N. Kristensen
Chandra L. Theesfeld
Karin U. Sorenmo
Olga G. Troyanskaya

First Published December 23, 2020

Resource

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

Valerie A. Schneider
Tina Graves-Lindsay
Kerstin Howe
Nathan Bouk
Hsiu-Chuan Chen
Paul A. Kitts Terence D. Murphy Kim D. Pruitt Françoise Thibaud-Nissen Derek Albracht Robert S. Fulton Milinn Kremitzki Vincent Magrini Chris Markovic Sean McGrath Karyn Meltz Steinberg Kate Auger William Chow Joanna Collins Glenn Harden Timothy Hubbard Sarah Pelan Jared T. Simpson Glen Threadgold James Torrance Jonathan M. Wood Laura Clarke Sergey Koren Matthew Boitano Paul Peluso Heng Li Chen-Shan Chin Adam M. Phillippy Richard Durbin
... [+29 authors] ...,
Richard K. Wilson
Paul Flicek
Evan E. Eichler
Deanna M. Church

First Published April 10, 2017

Resource

Single haplotype assembly of the human genome from a hydatidiform mole

Karyn Meltz Steinberg
Valerie A. Schneider
Tina A. Graves-Lindsay
Robert S. Fulton
Richa Agarwala
John Huddleston Sergey A. Shiryev Aleksandr Morgulis Urvashi Surti
... [+4 authors] ...,
Wesley C. Warren
Deanna M. Church
Evan E. Eichler
Richard K. Wilson

First Published November 4, 2014

Resource

Exploring the human genome with functional maps

Curtis Huttenhower
Erin M. Haley
Matthew A. Hibbs
Vanessa Dumeaux
Daniel R. Barrett
Hilary A. Coller
Olga G. Troyanskaya

First Published February 26, 2009