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SwinePan for pig graph-based pangenome and multiomics data mining

  • Meng Lin
  • Langqing Liu
  • Gengyuan Cai
  • Sixiu Huang
  • Yibin Qiu
  • Zekai Yao Shaoxiong Deng Shiyuan Wang Yiyi Liu Donglin Ruan Fuchen Zhou Jiajin Wu
  • ... [+7 authors] ...,
  • Zebin Zhang
  • Enqin Zheng
  • Jie Yang
  • Zhenfang Wu
  • First Published September 16, 2026
Resource

Caenorhabditis nigoni and Caenorhabditis briggsae reveal divergence in satellite DNA abundance" > T2T genomes of Caenorhabditis nigoni and Caenorhabditis briggsae reveal divergence in satellite DNA abundance

  • Ryan Pellow
  • Manitejus Kotikalapudi
  • Ofer Rog
  • First Published September 4, 2026
Resource

Genome-wide survey of spliceosomal snRNA transcripts across hundreds of human biosamples reveals abundant transcription but low maturation level of snRNA variants

  • Xiao-Ou Zhang
  • Ya Zhang
  • Zhiping Weng
  • First Published September 4, 2026
Resource

A pangenome framework uncovers the role of deletions in repeated evolution of cave-derived traits

  • Emma Y. Roback
  • Maggs X
  • Edward S. Ricemeyer
  • Adam Warlen
  • Rachel A. Carroll
  • Christine G. Elsik
  • ... [+1 authors] ...,
  • Alex C. Keene
  • Nicolas Rohner
  • Suzanne E. McGaugh
  • Wesley C. Warren
  • First Published August 13, 2026
Resource

Uniform processing and analysis of IGVF massively parallel reporter assay data with MPRAsnakeflow

  • Jonathan D. Rosen
  • Arjun Devadas Vasanthakumari
  • Kilian Salomon
  • Nikola de Lange
  • Pyaree Mohan Dash
  • Pia Keukeleire Ali Hassan Alejandro Barrera Beniamin Krupkin
  • ... [+4 authors] ...,
  • Grace Oualline
  • Martin Kircher
  • Michael I. Love
  • Max Schubach
  • First Published August 11, 2026
Resource

Dietary effects on cytosolic and mitochondrial tRNA abundance and modification patterns across mouse tissues

  • Simeiyun Liu
  • Andrew D. Holmes
  • Ruoxia Zhao
  • Cassandra Herbert
  • Patrick A. Limbach
  • Todd M. Lowe
  • Upasna Sharma
  • First Published July 8, 2026
Resource

Complete sequencing of medaka genomes reveals the architecture of centromeric satellites, giant mobile elements, and sex chromosomes

  • Yoshihiko Suzuki
  • Kazuki Ichikawa
  • Yusuke Inoue
  • Chie Owa
  • Haruka Kobayashi
  • Kenji Morikami Ryohei Nakamura Takafumi Ikeda Manabu Fujie Mayumi Kawamitsu Nana Arakaki Eugene W. Myers Hiroyuki Aburatani Yusuke Takehana Masaru Matsuda
  • ... [+10 authors] ...,
  • Kiyoshi Naruse
  • Shigehiro Kuraku
  • Hiroyuki Takeda
  • Shinichi Morishita
  • First Published July 1, 2026
Resource

Tracing genome size dynamics in sharks and rays with inclusive sequence analysis by the Squalomix Consortium

  • Shigehiro Kuraku
  • Yawako W. Kawaguchi
  • Taiki Niwa
  • Ryo Misawa
  • Yohey Ogawa
  • Mitsutaka Kadota Kazuhiro Saito Waichiro Godo Tatsuya Sakamoto
  • ... [+4 authors] ...,
  • Wataru Takagi
  • Sachiko Isobe
  • Kenta Shirasawa
  • Akane Kawaguchi
  • First Published June 16, 2026
Resource

A comprehensive single-cell atlas of monoallelic expression across various tissues in zebrafish

  • Hui Zeng
  • Zhan Liu
  • Huimin Xiang
  • Boliang Liu
  • Di Zhang
  • Xionglei He
  • Shanjun Deng
  • Li Liu
  • First Published May 28, 2026
Resource

Lignature provides a curated resource of ligand-induced transcriptomic signatures for signaling inference

  • Ying Xin
  • Md Amanullah
  • Cheng Qian
  • Chingmo Zhou
  • Jiang Qian
  • First Published April 8, 2026
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