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Methods

An MCMC algorithm for haplotype assembly from whole-genome sequence data

  • First Published August 1, 2008
Methods

Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes

  • First Published April 21, 2008
RESOURCE

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

  • First Published November 5, 2007
Methods

Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation

  • First Published August 9, 2007
RESOURCE

A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly

  • First Published June 13, 2007
Methods

Improving gene annotation using peptide mass spectrometry

  • First Published December 22, 2006
Methods

Evidence for large inversion polymorphisms in the human genome from HapMap data

  • First Published December 21, 2006
Methods

ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements

  • First Published October 19, 2006
RESOURCE

Galaxy: A platform for interactive large-scale genome analysis

  • First Published September 16, 2005
RESOURCE

zPicture: Dynamic Alignment and Visualization Tool for Analyzing Conservation Profiles

  • First Published March 1, 2004
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