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28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

  • Webb Miller
  • Kate Rosenbloom
  • Ross C. Hardison
  • Minmei Hou
  • James Taylor
  • Brian Raney Richard Burhans David C. King Robert Baertsch Daniel Blankenberg Sergei L. Kosakovsky Pond Anton Nekrutenko Belinda Giardine Robert S. Harris Svitlana Tyekucheva Mark Diekhans Thomas H. Pringle William J. Murphy Arthur Lesk George M. Weinstock Kerstin Lindblad-Toh Richard A. Gibbs
  • ... [+17 authors] ...,
  • Eric S. Lander
  • Adam Siepel
  • David Haussler
  • W. James Kent
  • First Published November 5, 2007

A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly

  • Daniel Blankenberg
  • James Taylor
  • Ian Schenck
  • Jianbin He
  • Yi Zhang
  • Matthew Ghent Narayanan Veeraraghavan Istvan Albert
  • ... [+3 authors] ...,
  • Webb Miller
  • Kateryna D. Makova
  • Ross C. Hardison
  • Anton Nekrutenko
  • First Published June 13, 2007

ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements

  • James Taylor
  • Svitlana Tyekucheva
  • David C. King
  • Ross C. Hardison
  • Webb Miller
  • Francesca Chiaromonte
  • First Published October 19, 2006

Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling" > Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling

  • Ryan D. Morin
  • Elbert Chang
  • Anca Petrescu
  • Nancy Liao
  • Malachi Griffith
  • Robert Kirkpatrick Yaron S. Butterfield Alice C. Young Jeffrey Stott Sarah Barber Ryan Babakaiff Mark C. Dickson Corey Matsuo David Wong George S. Yang Duane E. Smailus Keith D. Wetherby Peggy N. Kwong Jane Grimwood Charles P. Brinkley Mabel Brown-John Natalie D. Reddix-Dugue Michael Mayo Jeremy Schmutz Jaclyn Beland Morgan Park Susan Gibson Teika Olson Gerard G. Bouffard Miranda Tsai Ruth Featherstone Steve Chand Asim S. Siddiqui Wonhee Jang Ed Lee Steven L. Klein Robert W. Blakesley Barry R. Zeeberg Sudarshan Narasimhan John N. Weinstein Christa Prange Pennacchio Richard M. Myers Eric D. Green Lukas Wagner
  • ... [+39 authors] ...,
  • Daniela S. Gerhard
  • Marco A. Marra
  • Steven J.M. Jones
  • Robert A. Holt
  • First Published May 3, 2006

Galaxy: A platform for interactive large-scale genome analysis

  • Belinda Giardine
  • Cathy Riemer
  • Ross C. Hardison
  • Richard Burhans
  • Laura Elnitski
  • Prachi Shah Yi Zhang Daniel Blankenberg Istvan Albert
  • ... [+4 authors] ...,
  • James Taylor
  • Webb Miller
  • W. James Kent
  • Anton Nekrutenko
  • First Published September 16, 2005

zPicture: Dynamic Alignment and Visualization Tool for Analyzing Conservation Profiles

  • Ivan Ovcharenko
  • Gabriela G. Loots
  • Ross C. Hardison
  • Webb Miller
  • Lisa Stubbs
  • First Published March 1, 2004
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