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28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

Webb Miller
Kate Rosenbloom
Ross C. Hardison
Minmei Hou
James Taylor
Brian Raney Richard Burhans David C. King Robert Baertsch Daniel Blankenberg Sergei L. Kosakovsky Pond Anton Nekrutenko Belinda Giardine Robert S. Harris Svitlana Tyekucheva Mark Diekhans Thomas H. Pringle William J. Murphy Arthur Lesk George M. Weinstock Kerstin Lindblad-Toh Richard A. Gibbs
... [+17 authors] ...,
Eric S. Lander
Adam Siepel
David Haussler
W. James Kent

First Published November 5, 2007

A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly

Daniel Blankenberg
James Taylor
Ian Schenck
Jianbin He
Yi Zhang
Matthew Ghent Narayanan Veeraraghavan Istvan Albert
... [+3 authors] ...,
Webb Miller
Kateryna D. Makova
Ross C. Hardison
Anton Nekrutenko

First Published June 13, 2007

ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements

James Taylor
Svitlana Tyekucheva
David C. King
Ross C. Hardison
Webb Miller
Francesca Chiaromonte

First Published October 19, 2006

Reconstructing contiguous regions of an ancestral genome

Jian Ma
Louxin Zhang
Bernard B. Suh
Brian J. Raney
Richard C. Burhans
W. James Kent
Mathieu Blanchette
David Haussler
Webb Miller

First Published September 18, 2006

Galaxy: A platform for interactive large-scale genome analysis

Belinda Giardine
Cathy Riemer
Ross C. Hardison
Richard Burhans
Laura Elnitski
Prachi Shah Yi Zhang Daniel Blankenberg Istvan Albert
... [+4 authors] ...,
James Taylor
Webb Miller
W. James Kent
Anton Nekrutenko

First Published September 16, 2005

A 1463 Gene Cattle–Human Comparative Map With Anchor Points Defined by Human Genome Sequence Coordinates

Annelie Everts-van der Wind
Srinivas R. Kata
Mark R. Band
Mark Rebeiz
Denis M. Larkin
Robin E. Everts Cheryl A. Green Lei Liu Shreedhar Natarajan Tom Goldammer
... [+5 authors] ...,
Jun Heon Lee
Stephanie McKay
James E. Womack
Harris A. Lewin

First Published July 1, 2004

Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner

Mathieu Blanchette
W. James Kent
Cathy Riemer
Laura Elnitski
Arian F.A. Smit
Krishna M. Roskin Robert Baertsch Kate Rosenbloom
... [+3 authors] ...,
Hiram Clawson
Eric D. Green
David Haussler
Webb Miller

First Published April 1, 2004

zPicture: Dynamic Alignment and Visualization Tool for Analyzing Conservation Profiles

Ivan Ovcharenko
Gabriela G. Loots
Ross C. Hardison
Webb Miller
Lisa Stubbs

First Published March 1, 2004

A Cattle–Human Comparative Map Built with Cattle BAC-Ends and Human Genome Sequence

Denis M. Larkin
Annelie Everts-van der Wind
Mark Rebeiz
Peter A. Schweitzer
Sharon Bachman
Cheryl Green Chris L. Wright Edhilvia J. Campos Leslie D. Benson Jennifer Edwards Lei Liu
... [+6 authors] ...,
Kazutoyo Osoegawa
James E. Womack
Pieter J. de Jong
Harris A. Lewin

First Published August 5, 2003