Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Method
Ultrafast functional profiling of RNA-seq data for nonmodel organisms
- First Published March 17, 2021
Method
PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments
- First Published September 21, 2020
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Method
Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq
- First Published July 12, 2016
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013
