Search | Genome Research

Your search for returned 7 results

Method

Robust annotation and discovery of novel cell types in single-cell ATAC-seq data through cross-modal reference alignment

Lan Cao
Wenhao Zhang
Feng Zhou
Yushuang He
Yongyu Long
Shengquan Chen
Ying Wang

First Published August 28, 2026

Method

Fast and memory efficient partial order alignment with minipoa

Haodong Liu
Pinglu Zhang
Yanming Wei
Qinzhong Tian
Yixiao Zhai
Quan Zou
Mengting Niu

First Published July 24, 2026

Method

Deep learning the TF regulatory code for gene expression

Yuanyuan Li
Xiaohui Huang
Yixuan Qi
Zheng Zhang
Hui Ding
Quan Zou
Li Liu

First Published May 15, 2026

Method

Incorporating valuable prior knowledge to improve deep learning prediction of genetic perturbation responses

Xiuhao Fu
Chao Yang
Chunyan Cui
Aoyun Geng
Yidi Sun
Chao Zha Feifei Cui
... [+2 authors] ...,
Leyi Wei
Quan Zou
Xin Gao
Zilong Zhang

First Published March 26, 2026

Method

N⁴-methylcytosine sites using a dual-adaptive feature encoding framework in deep ensembles" > EnDeep4mC predicts DNA N⁴-methylcytosine sites using a dual-adaptive feature encoding framework in deep ensembles

Shuyu Zhang
Quan Zou
Mengting Niu
Zhibin Lv
Antony Stalin
Ximei Luo

First Published February 17, 2026

Method

Recovering gene regulatory networks in single-cell multi-omics data with PRISM-GRN

Wenhao Zhang
Lan Cao
Xiaoxuan Gu
Yongyu Long
Ying Wang

First Published October 9, 2025

Method

Fast sequence alignment for centromeres with RaMA

Pinglu Zhang
Yanming Wei
Qinzhong Tian
Quan Zou
Yansu Wang

First Published February 12, 2025