Method
Accurate delineation of cellular niches via integrated spatial transcriptomics and histological imaging with SYMOL
- First Published May 14, 2026
Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Method
A gene regulatory network–aware graph learning method for cell identity annotation in single-cell RNA-seq data
- First Published August 12, 2024
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013
