Search | Genome Research

CL_GR_DMAP_728x90

Your search for returned 13 results

Method

Phased nanopore assembly with Shasta and modular graph phasing with GFAse

Ryan Lorig-Roach
Melissa Meredith
Jean Monlong
Miten Jain
Hugh E. Olsen
Brandy McNulty David Porubsky Tessa G. Montague Julian K. Lucas Chris Condon Jordan M. Eizenga Sissel Juul Sean K. McKenzie Sara E. Simmonds Jimin Park Mobin Asri Sergey Koren Evan E. Eichler Richard Axel
... [+14 authors] ...,
Bruce Martin
Paolo Carnevali
Karen H. Miga
Benedict Paten

First Published April 16, 2024

Method

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

Sergey Nurk
Brian P. Walenz
Arang Rhie
Mitchell R. Vollger
Glennis A. Logsdon
Robert Grothe
... [+1 authors] ...,
Karen H. Miga
Evan E. Eichler
Adam M. Phillippy
Sergey Koren

First Published August 14, 2020

Method

Transcriptional fates of human-specific segmental duplications in brain

Max L. Dougherty
Jason G. Underwood
Bradley J. Nelson
Elizabeth Tseng
Katherine M. Munson
Osnat Penn
Tomasz J. Nowakowski
Alex A. Pollen
Evan E. Eichler

First Published September 18, 2018

Method

Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation

Ian T. Fiddes
Joel Armstrong
Mark Diekhans
Stefanie Nachtweide
Zev N. Kronenberg
Jason G. Underwood David Gordon Dent Earl Thomas Keane
... [+4 authors] ...,
Evan E. Eichler
David Haussler
Mario Stanke
Benedict Paten

First Published June 8, 2018

Method

MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

Keisha D. Carlson
Peter H. Sudmant
Maximilian O. Press
Evan E. Eichler
Jay Shendure
Christine Queitsch

First Published February 6, 2015

Method

The discovery of integrated gene networks for autism and related disorders

Fereydoun Hormozdiari
Osnat Penn
Elhanan Borenstein
Evan E. Eichler

First Published November 5, 2014

Method

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

Gavin Ha
Andrew Roth
Jaswinder Khattra
Julie Ho
Damian Yap
Leah M. Prentice Nataliya Melnyk Andrew McPherson Ali Bashashati Emma Laks Justina Biele Jiarui Ding Alan Le Jamie Rosner Karey Shumansky Marco A. Marra C. Blake Gilks
... [+12 authors] ...,
David G. Huntsman
Jessica N. McAlpine
Samuel Aparicio
Sohrab P. Shah

First Published July 24, 2014

Method

Reconstructing complex regions of genomes using long-read sequencing technology

John Huddleston
Swati Ranade
Maika Malig
Francesca Antonacci
Mark Chaisson
Lawrence Hon Peter H. Sudmant Tina A. Graves Can Alkan Megan Y. Dennis
... [+5 authors] ...,
Richard K. Wilson
Stephen W. Turner
Jonas Korlach
Evan E. Eichler

First Published January 13, 2014

Method

Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm

Bo Zhang
Yan Zhou
Nan Lin
Rebecca F. Lowdon
Chibo Hong
Raman P. Nagarajan Jeffrey B. Cheng Daofeng Li Michael Stevens Hyung Joo Lee Xiaoyun Xing Jia Zhou Vasavi Sundaram GiNell Elliott Junchen Gu Taoping Shi Philippe Gascard Mahvash Sigaroudinia Thea D. Tlsty Theresa Kadlecek Arthur Weiss Henriette O’Geen Peggy J. Farnham Cécile L. Maire Keith L. Ligon Pamela A.F. Madden Angela Tam Richard Moore Martin Hirst
... [+24 authors] ...,
Marco A. Marra
Baoxue Zhang
Joseph F. Costello
Ting Wang

First Published June 26, 2013

Method

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods

Michael Stevens
Jeffrey B. Cheng
Daofeng Li
Mingchao Xie
Chibo Hong
Cécile L. Maire Keith L. Ligon
... [+2 authors] ...,
Martin Hirst
Marco A. Marra
Joseph F. Costello
Ting Wang

First Published June 26, 2013

1
2