Method
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
- First Published March 20, 2025
Method
Multiplexed long-read plasmid validation and analysis using OnRamp
- First Published May 8, 2023
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Method
TRACE: transcription factor footprinting using chromatin accessibility data and DNA sequence
- First Published July 6, 2020
Method
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- First Published April 19, 2017
Method
Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
- First Published May 2, 2013
Method
Linking disease associations with regulatory information in the human genome
- First Published September 5, 2012
Method
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
- First Published November 24, 2010