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Method

Flexible and scalable inference of spatially varying correlation in spatial transcriptomics with spCorr

  • Chenxin Flora Jiang
  • Yuxin Yin
  • Paul Robson
  • Yuanhao James Li
  • Jingyi Jessica Li
  • Dongyuan Song
  • First Published June 17, 2026
Method

Multiplexed long-read plasmid validation and analysis using OnRamp

  • Camille Mumm
  • Melissa L. Drexel
  • Torrin L. McDonald
  • Adam G. Diehl
  • Jessica A. Switzenberg
  • Alan P. Boyle
  • First Published May 8, 2023
Method

TRACE: transcription factor footprinting using chromatin accessibility data and DNA sequence

  • Ningxin Ouyang
  • Alan P. Boyle
  • First Published July 6, 2020
Method

Linking disease associations with regulatory information in the human genome

  • Marc A. Schaub
  • Alan P. Boyle
  • Anshul Kundaje
  • Serafim Batzoglou
  • Michael Snyder
  • First Published September 5, 2012
Method

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

  • Alan P. Boyle
  • Lingyun Song
  • Bum-Kyu Lee
  • Darin London
  • Damian Keefe
  • Ewan Birney
  • Vishwanath R. Iyer
  • Gregory E. Crawford
  • Terrence S. Furey
  • First Published November 24, 2010
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