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Letter

Ride the wavelet: A multiscale analysis of genomic contexts flanking small insertions and deletions

Erika M. Kvikstad
Francesca Chiaromonte
Kateryna D. Makova

First Published June 5, 2009

LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

Yong Cheng
David C. King
Louis C. Dore
Xinmin Zhang
Yuepin Zhou
Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
... [+5 authors] ...,
Webb Miller
Roland D. Green
Mitchell J. Weiss
Ross C. Hardison

First Published September 25, 2008

LETTER

The genome-wide determinants of human and chimpanzee microsatellite evolution

Yogeshwar D. Kelkar
Svitlana Tyekucheva
Francesca Chiaromonte
Kateryna D. Makova

First Published November 21, 2007

LETTER

cis-regulatory elements using comparative genomics: Some lessons from ENCODE data" > Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data

David C. King
James Taylor
Ying Zhang
Yong Cheng
Heather A. Lawson
Joel Martin
Francesca Chiaromonte
Webb Miller
Ross C. Hardison

First Published June 13, 2007

LETTER

cis-regulatory modules" > Experimental validation of predicted mammalian erythroid cis-regulatory modules

Hao Wang
Ying Zhang
Yong Cheng
Yuepin Zhou
David C. King
James Taylor Francesca Chiaromonte Jyotsna Kasturi Hanna Petrykowska Brian Gibb Christine Dorman Webb Miller
... [+7 authors] ...,
Louis C. Dore
John Welch
Mitchell J. Weiss
Ross C. Hardison

First Published October 12, 2006

LETTER

cis-regulatory modules in aligned mammalian genome sequences" > Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences

David C. King
James Taylor
Laura Elnitski
Francesca Chiaromonte
Webb Miller
Ross C. Hardison

First Published July 15, 2005

LETTER

Insertions and Deletions Are Male Biased Too: A Whole-Genome Analysis in Rodents

Kateryna D. Makova
Shan Yang
Francesca Chiaromonte

First Published April 1, 2004

LETTER

Continued Discovery of Transcriptional Units Expressed in Cells of the Mouse Mononuclear Phagocyte Lineage

Christine A. Wells
Timothy Ravasi
Razvan Sultana
Ken Yagi
Piero Carninci
Hidemasa Bono Geoffrey Faulkner
... [+2 authors] ...,
Yasushi Okazaki
John Quackenbush
David A. Hume
Paul A. Lyons

First Published June 2, 2003

LETTER

The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment

Sean M. Grimmond
Kevin C. Miranda
Zheng Yuan
Melissa J. Davis
David A. Hume
Ken Yagi Naoko Tominaga
... [+2 authors] ...,
Hidemasa Bono
Yoshihide Hayashizaki
Yasushi Okazaki
Rohan D. Teasdale

First Published June 2, 2003

LETTER

Analysis of the Mouse Transcriptome for Genes Involved in the Function of the Nervous System

Stefano Gustincich
Serge Batalov
Kirk W. Beisel
Hidemasa Bono
Piero Carninci
Colin F. Fletcher Sean Grimmond Nobutaka Hirokawa Erich D. Jarvis Tim Jegla Yuka Kawasawa Julianna LeMieux Harukata Miki Elio Raviola Rohan D. Teasdale Naoko Tominaga
... [+11 authors] ...,
Ken Yagi
Andreas Zimmer
Yoshihide Hayashizaki
Yasushi Okazaki

First Published June 2, 2003

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