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LETTER

Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

  • Michael Freeling
  • Eric Lyons
  • Brent Pedersen
  • Maqsudul Alam
  • Ray Ming
  • Damon Lisch
  • First Published October 3, 2008
LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

  • Yong Cheng
  • David C. King
  • Louis C. Dore
  • Xinmin Zhang
  • Yuepin Zhou
  • Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
  • ... [+5 authors] ...,
  • Webb Miller
  • Roland D. Green
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published September 25, 2008
LETTER

Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data

  • David C. King
  • James Taylor
  • Ying Zhang
  • Yong Cheng
  • Heather A. Lawson
  • Joel Martin
  • Francesca Chiaromonte
  • Webb Miller
  • Ross C. Hardison
  • First Published June 13, 2007
LETTER

Experimental validation of predicted mammalian erythroid cis-regulatory modules

  • Hao Wang
  • Ying Zhang
  • Yong Cheng
  • Yuepin Zhou
  • David C. King
  • James Taylor Francesca Chiaromonte Jyotsna Kasturi Hanna Petrykowska Brian Gibb Christine Dorman Webb Miller
  • ... [+7 authors] ...,
  • Louis C. Dore
  • John Welch
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published October 12, 2006
LETTER

Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes

  • Brian C. Thomas
  • Brent Pedersen
  • Michael Freeling
  • First Published June 7, 2006
LETTER

Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences

  • David C. King
  • James Taylor
  • Laura Elnitski
  • Francesca Chiaromonte
  • Webb Miller
  • Ross C. Hardison
  • First Published July 15, 2005
LETTER

4" > Conserved Noncoding Sequences in the Grasses4

  • Dan Choffnes Inada
  • Ali Bashir
  • Chunghau Lee
  • Brian C. Thomas
  • Cynthia Ko
  • Stephen A. Goff
  • Michael Freeling
  • First Published September 2, 2003
LETTER

Distinguishing Regulatory DNA From Neutral Sites

  • Laura Elnitski
  • Ross C. Hardison
  • Jia Li
  • Shan Yang
  • Diana Kolbe
  • Pallavi Eswara
  • ... [+1 authors] ...,
  • Michael J. O'Connor
  • Scott Schwartz
  • Webb Miller
  • Francesca Chiaromonte
  • First Published January 1, 2003
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