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LETTER

Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history

  • Philip M. Kim
  • Hugo Y.K. Lam
  • Alexander E. Urban
  • Jan O. Korbel
  • Jason Affourtit
  • Fabian Grubert
  • ... [+1 authors] ...,
  • Xueying Chen
  • Sherman Weissman
  • Michael Snyder
  • Mark B. Gerstein
  • First Published October 8, 2008
LETTER

Arabidopsis transposed after the origin of the order Brassicales" > Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

  • Michael Freeling
  • Eric Lyons
  • Brent Pedersen
  • Maqsudul Alam
  • Ray Ming
  • Damon Lisch
  • First Published October 3, 2008
LETTER

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

  • A. Gordon Robertson
  • Mikhail Bilenky
  • Angela Tam
  • Yongjun Zhao
  • Thomas Zeng
  • Nina Thiessen Timothee Cezard Anthony P. Fejes Elizabeth D. Wederell Rebecca Cullum Ghia Euskirchen Martin Krzywinski Inanc Birol Michael Snyder
  • ... [+9 authors] ...,
  • Pamela A. Hoodless
  • Martin Hirst
  • Marco A. Marra
  • Steven J.M. Jones
  • First Published September 11, 2008
LETTER

A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation

  • Zheng Lian
  • Alexander Karpikov
  • Jin Lian
  • Milind C. Mahajan
  • Stephen Hartman
  • Mark Gerstein
  • Michael Snyder
  • Sherman M. Weissman
  • First Published May 16, 2008
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
LETTER

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions

  • Zhengdong D. Zhang
  • Alberto Paccanaro
  • Yutao Fu
  • Sherman Weissman
  • Zhiping Weng
  • Joseph Chang
  • Michael Snyder
  • Mark B. Gerstein
  • First Published June 13, 2007
LETTER

Structured RNAs in the ENCODE selected regions of the human genome

  • Stefan Washietl
  • Jakob S. Pedersen
  • Jan O. Korbel
  • Claudia Stocsits
  • Andreas R. Gruber
  • Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Reiche Andrea Tanzer Catherine Ucla Carine Wyss Stylianos E. Antonarakis France Denoeud Julien Lagarde Jorg Drenkow Philipp Kapranov Thomas R. Gingeras Roderic Guigó Michael Snyder
  • ... [+15 authors] ...,
  • Mark B. Gerstein
  • Alexandre Reymond
  • Ivo L. Hofacker
  • Peter F. Stadler
  • First Published June 13, 2007
LETTER

Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution

  • Deyou Zheng
  • Adam Frankish
  • Robert Baertsch
  • Philipp Kapranov
  • Alexandre Reymond
  • Siew Woh Choo Yontao Lu France Denoeud Stylianos E. Antonarakis Michael Snyder Yijun Ruan Chia-Lin Wei
  • ... [+7 authors] ...,
  • Thomas R. Gingeras
  • Roderic Guigó
  • Jennifer Harrow
  • Mark B. Gerstein
  • First Published June 13, 2007
LETTER

Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes" > Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes

  • Brian C. Thomas
  • Brent Pedersen
  • Michael Freeling
  • First Published June 7, 2006
LETTER

4" > Conserved Noncoding Sequences in the Grasses4

  • Dan Choffnes Inada
  • Ali Bashir
  • Chunghau Lee
  • Brian C. Thomas
  • Cynthia Ko
  • Stephen A. Goff
  • Michael Freeling
  • First Published September 2, 2003
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