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ARTICLE

A code for transcription initiation in mammalian genomes

Martin C. Frith
Eivind Valen
Anders Krogh
Yoshihide Hayashizaki
Piero Carninci
Albin Sandelin

First Published November 21, 2007

ARTICLE

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

Elliott H. Margulies
Gregory M. Cooper
George Asimenos
Daryl J. Thomas
Colin N. Dewey
Adam Siepel Ewan Birney Damian Keefe Ariel S. Schwartz Minmei Hou James Taylor Sergey Nikolaev Juan I. Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham James B. Brown Peter Bickel Ian Holmes James C. Mullikin Abel Ureta-Vidal Benedict Paten Eric A. Stone Kate R. Rosenbloom W. James Kent Gerard G. Bouffard Xiaobin Guan Nancy F. Hansen Jacquelyn R. Idol Valerie V.B. Maduro Baishali Maskeri Jennifer C. McDowell Morgan Park Pamela J. Thomas Alice C. Young Robert W. Blakesley Donna M. Muzny Erica Sodergren David A. Wheeler Kim C. Worley Huaiyang Jiang George M. Weinstock Richard A. Gibbs Tina Graves Robert Fulton Elaine R. Mardis Richard K. Wilson Michele Clamp James Cuff Sante Gnerre David B. Jaffe Jean L. Chang Kerstin Lindblad-Toh Eric S. Lander Angie Hinrichs Heather Trumbower Hiram Clawson Ann Zweig Robert M. Kuhn Galt Barber Rachel Harte Donna Karolchik Matthew A. Field Richard A. Moore Carrie A. Matthewson Jacqueline E. Schein Marco A. Marra Stylianos E. Antonarakis Serafim Batzoglou Nick Goldman Ross Hardison David Haussler
... [+68 authors] ...,
Webb Miller
Lior Pachter
Eric D. Green
Arend Sidow

First Published June 13, 2007

ARTICLE

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

Timothy Ravasi
Harukazu Suzuki
Ken C. Pang
Shintaro Katayama
Masaaki Furuno
Rie Okunishi Shiro Fukuda Kelin Ru Martin C. Frith M. Milena Gongora
... [+5 authors] ...,
Sean M. Grimmond
David A. Hume
Yoshihide Hayashizaki
John S. Mattick

First Published December 12, 2005

ARTICLE

Distribution and intensity of constraint in mammalian genomic sequence

Gregory M. Cooper
Eric A. Stone
George Asimenos
Eric D. Green
Serafim Batzoglou
Arend Sidow

First Published June 17, 2005

ARTICLE

Disclosing hidden transcripts: Mouse natural sense–antisense transcripts tend to be poly(A) negative and nuclear localized

Hidenori Kiyosawa
Nathan Mise
Shigeru Iwase
Yoshihide Hayashizaki
Kuniya Abe

First Published March 21, 2005

ARTICLE

Identification and Characterization of Multi-Species Conserved Sequences

Elliott H. Margulies
Mathieu Blanchette
David Haussler
Eric D. Green

First Published December 1, 2003

ARTICLE

Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia

Piero Carninci
Kazunori Waki
Toshiyuki Shiraki
Hideaki Konno
Kazuhiro Shibata
Masayoshi Itoh Katsunori Aizawa Takahiro Arakawa Yoshiyuki Ishii Daisuke Sasaki Hidemasa Bono Shinji Kondo Yuichi Sugahara Rintaro Saito Naoki Osato Shiro Fukuda Kenjiro Sato Akira Watahiki Tomoko Hirozane-Kishikawa Mari Nakamura Yuko Shibata Ayako Yasunishi Noriko Kikuchi Atsushi Yoshiki Moriaki Kusakabe Stefano Gustincich Kirk Beisel William Pavan Vassilis Aidinis Akira Nakagawara William A. Held Hiroo Iwata Tomohiro Kono Hiromitsu Nakauchi Paul Lyons Christine Wells David A. Hume Michela Fagiolini Takao K. Hensch Michelle Brinkmeier Sally Camper Junji Hirota Peter Mombaerts
... [+38 authors] ...,
Masami Muramatsu
Yasushi Okazaki
Jun Kawai
Yoshihide Hayashizaki

First Published June 2, 2003

ARTICLE

Impact of Alternative Initiation, Splicing, and Termination on the Diversity of the mRNA Transcripts Encoded by the Mouse Transcriptome

Mihaela Zavolan
Shinji Kondo
Christian Schönbach
Jun Adachi
David A. Hume
Yoshihide Hayashizaki
Terry Gaasterland

First Published June 2, 2003

ARTICLE

Identification of Putative Noncoding RNAs Among the RIKEN Mouse Full-Length cDNA Collection

Koji Numata
Akio Kanai
Rintaro Saito
Shinji Kondo
Jun Adachi
Laurens G. Wilming
David A. Hume
Yoshihide Hayashizaki
Masaru Tomita

First Published June 2, 2003