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  1. ARTICLE: Interchromosomal segmental duplications of the pericentromeric region on the human Y chromosome
    • Stefan Kirsch,
    • Birgit Weiß,
    • Tracie L. Miner,
    • Robert H. Waterston,
    • Royden A. Clark,
    • Evan E. Eichler,
    • Claudia Münch,
    • Werner Schempp,
    • and Gudrun Rappold
    Genome Res. February 2005 15: 195-204; Published in Advance January 14, 2005, doi:10.1101/gr.3302705
    ...Interchromosomal segmental duplications of the pericentromeric region on the human Y chromosome Stefan Kirsch 1 , Birgit Weiß 1 , Tracie L. Miner 2 , Robert H. Waterston 2 , 5 , Royden A. Clark 3 , Evan E. Eichler 3 , Claudia...
  2. LETTER: Punctuated duplication seeding events during the evolution of human chromosome 2p11
    • Julie E. Horvath,
    • Cassandra L. Gulden,
    • Rhea U. Vallente,
    • Marla Y. Eichler,
    • Mario Ventura,
    • John D. McPherson,
    • Tina A. Graves,
    • Richard K. Wilson,
    • Stuart Schwartz,
    • Mariano Rocchi,
    • and Evan E. Eichler
    Genome Res. July 2005 15: 914-927; Published in Advance June 17, 2005, doi:10.1101/gr.3916405
    ...a systematic analysis of the evolutionary history of one ∼700-kb region of 2p11, including the first autosomal transition from pericentromeric sequence to higher-order α-satellite DNA. We show that this region is composed of segmental duplications corresponding to 14 ancestral segments ranging in size from 4...
  3. ARTICLE: Genomic Sequence and Transcriptional Profile of the Boundary Between Pericentromeric Satellites and Genes on Human Chromosome Arm 10p
    • Jane Guy,
    • Tom Hearn,
    • Moira Crosier,
    • Jonathan Mudge,
    • Luigi Viggiano,
    • Dirk Koczan,
    • Hans-Jurgen Thiesen,
    • Jeffrey A. Bailey,
    • Julie E. Horvath,
    • Evan E. Eichler,
    • Mark E. Earthrowl,
    • Panos Deloukas,
    • Lisa French,
    • Jane Rogers,
    • David Bentley,
    • and Michael S. Jackson
    Genome Res. February 1, 2003 13: 159-172; Published in Advance January 14, 2003, doi:10.1101/gr.644503
    ...from highly duplicated pericentromeric regions of human chromosomes is needed if we are to understand the role of pericentromeric instability in disease, and in gene and karyotype evolution. Here, we have constructed a BAC contig spanning the transition from pericentromeric satellites to genes...
  4. LETTER: Sex chromosome evolution: Molecular aspects of Y-chromosome degeneration in Drosophila
    • Doris Bachtrog
    Genome Res. October 2005 15: 1393-1401; Published in Advance September 16, 2005, doi:10.1101/gr.3543605
    ...active genes and an abundance of repetitive DNA. The neo-Y chromosome of Drosophila miranda is in transition from an ordinary autosome to a genetically inert Y-chromosome, while its homolog, the neo-X chromosome, is evolving partial dosage compensation. Here, I compare four large genomic regions located...
  5. Method: Double insertion of transposable elements provides a substrate for the evolution of satellite DNA
    • Michael P. McGurk and
    • Daniel A. Barbash
    Genome Res. May 2018 28: 714-725; Published in Advance March 27, 2018, doi:10.1101/gr.231472.117
    ...or Y heterochromatin based on the presence of rDNA and R-elements (Palazzo et al. 2016). We identify both expected junctions between Bari1 and Stalker4 in the all-female GDL sequences (Supplemental Table S4), indicating that it cannot reside on the Y Chromosome. Previous analyses identified the Bari1...
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