Searching journal content for articles similar to Garrido et al. 36 (3): 522.

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  1. Resource: Chromosome-level subgenome-aware de novo assembly provides insight into Saccharomyces bayanus genome divergence after hybridization
    • Cory Gardner,
    • Junhao Chen,
    • Christina Hadfield,
    • Zhaolian Lu,
    • David Debruin,
    • Yu Zhan,
    • Maureen J. Donlin,
    • Tae-Hyuk Ahn,
    • and Zhenguo Lin
    Genome Res. November 2024 34: 2133-2146; Published in Advance September 17, 2024, doi:10.1101/gr.279364.124
    ...the introgression of Saccharomyces cerevisiae, such as those involved in the maltose metabolism. Finally, the patterns of recombination and LOH suggest an allotetraploid origin of S. bayanus. The gene acquisition and rapid LOH in the hybrid probably facilitated its adaptation to maltose brewing environments...
  2. Research: Chromosome-specific telomere lengths and the minimal functional telomere revealed by nanopore sequencing
    • Samantha L. Sholes,
    • Kayarash Karimian,
    • Ariel Gershman,
    • Thomas J. Kelly,
    • Winston Timp,
    • and Carol W. Greider
    Genome Res. April 2022 32: 616-628; Published in Advance October 26, 2021, doi:10.1101/gr.275868.121
    ...and Armanios 2015; McNally et al. 2019). Thus, deviation from the mean telomere length in either direction affects cellular lifespan and plays a critical role in disease.The yeast Saccharomyces cerevisiae serves as an excellent model for probing mechanisms of telomere length regulation. Many genes...
  3. Research: Unique genetic basis of the distinct antibiotic potency of high acetic acid production in the probiotic yeast Saccharomyces cerevisiae var. boulardii
    • Benjamin Offei,
    • Paul Vandecruys,
    • Stijn De Graeve,
    • María R. Foulquié-Moreno,
    • and Johan M. Thevelein
    Genome Res. September 2019 29: 1478-1494; Published in Advance August 29, 2019, doi:10.1101/gr.243147.118
    ...obscure. It is considered conspecific with budding yeast Saccharomyces cerevisiae, which is generally used in classical food applications. They have an almost identical sequence, making the genetic basis of probiotic potency in S. boulardii puzzling. We now show that S. boulardii produces at 37°C...
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  4. Research: Diversification and collapse of a telomere elongation mechanism
    • Bastien Saint-Leandre,
    • Son C. Nguyen,
    • and Mia T. Levine
    Genome Res. June 2019 29: 920-931; Published in Advance May 28, 2019, doi:10.1101/gr.245001.118
    ...highlight the divergent jockey subclade content even across species that share a common retrotransposon lineage and suggest low functional constraint on telomere length.To further refine our snapshot of retrotransposon invasion and degeneration history, we generated frequency distributions of pairwise read...
  5. Resource: The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
    • Pooja K. Strope,
    • Daniel A. Skelly,
    • Stanislav G. Kozmin,
    • Gayathri Mahadevan,
    • Eric A. Stone,
    • Paul M. Magwene,
    • Fred S. Dietrich,
    • and John H. McCusker
    Genome Res. May 2015 25: 762-774; Published in Advance April 3, 2015, doi:10.1101/gr.185538.114
    ...protein-coding gene sequences, the genomic locations of which are distributed across the (Supplemental Table S5). Of the 401 highly diverged genes, 83 geneshad low (70%–95%) similarity to sequenced Saccharomyces species, suggesting introgression from one or more unsequenced species of Saccharomyces...
  6. Research: SORBS2 transcription is activated by telomere position effect–over long distance upon telomere shortening in muscle cells from patients with facioscapulohumeral dystrophy
    • Jérôme D. Robin,
    • Andrew T. Ludlow,
    • Kimberly Batten,
    • Marie-Cécile Gaillard,
    • Guido Stadler,
    • Frédérique Magdinier,
    • Woodring E. Wright,
    • and Jerry W. Shay
    Genome Res. December 2015 25: 1781-1790; Published in Advance September 10, 2015, doi:10.1101/gr.190660.115
    ...by dots), BIS-mid (31 CpGs), and BIS-3′ (14 CpGs). For each sequence, several clones were analyzed from DNA obtained from control myoblasts with long or short telomeres and FSHD myoblasts with long or short telomeres. The distribution of methylated (black dots) or unmethylated (white dots) is represented...
  7. Research: Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments
    • Barbara Dunn,
    • Chandra Richter,
    • Daniel J. Kvitek,
    • Tom Pugh,
    • and Gavin Sherlock
    Genome Res. May 2012 22: 908-924; Published in Advance February 27, 2012, doi:10.1101/gr.130310.111
    ...Analysis of the Saccharomyces cerevisiae pan- reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments Barbara Dunn1, Chandra Richter2, Daniel J. Kvitek1, Tom Pugh2 and Gavin Sherlock1,3 1Department of Genetics, Stanford University, Stanford...
  8. Letter: Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production
    • Juan Lucas Argueso,
    • Marcelo F. Carazzolle,
    • Piotr A. Mieczkowski,
    • Fabiana M. Duarte,
    • Osmar V.C. Netto,
    • Silvia K. Missawa,
    • Felipe Galzerani,
    • Gustavo G.L. Costa,
    • Ramon O. Vidal,
    • Melline F. Noronha,
    • Margaret Dominska,
    • Maria G.S. Andrietta,
    • Sílvio R. Andrietta,
    • Anderson F. Cunha,
    • Luiz H. Gomes,
    • Flavio C.A. Tavares,
    • André R. Alcarde,
    • Fred S. Dietrich,
    • John H. McCusker,
    • Thomas D. Petes,
    • and Gonçalo A.G. Pereira
    Genome Res. December 2009 19: 2258-2270; Published in Advance October 7, 2009, doi:10.1101/gr.091777.109
    ...from the fermentation of carbohydrates derived from agricultural feedstocks by the yeast Saccharomyces cerevisiae . One of the most widely adopted strains is PE-2, a heterothallic diploid naturally adapted to the sugar cane fermentation process used in Brazil. Here we report the molecular genetic...
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  9. Letter: A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae
    • Luke E. Berchowitz,
    • Sean E. Hanlon,
    • Jason D. Lieb,
    • and Gregory P. Copenhaver
    Genome Res. December 2009 19: 2245-2257; Published in Advance October 2, 2009, doi:10.1101/gr.096297.109
    ...A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae Luke E. Berchowitz 1 , 3 , Sean E. Hanlon 1 , 2 , 3 , Jason D. Lieb 1 , 2 , 4 and Gregory P. Copenhaver 1 , 2...
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  10. Research: Natural genetic variation in yeast longevity
    • Stefan W. Stumpferl,
    • Sue E. Brand,
    • James C. Jiang,
    • Boguslawa Korona,
    • Anurag Tiwari,
    • Jianliang Dai,
    • Jae-Gu Seo,
    • and S. Michal Jazwinski
    Genome Res. October 2012 22: 1963-1973; Published in Advance September 5, 2012, doi:10.1101/gr.136549.111
    ...thousands of single-nucleotide polymorphisms across the yeast (Winzeler et al. 1998). Here, we have used this strategy to map QTLs associated with RLS in S. cerevisiae. We sampled the natural genetic variation in a clinically derived S. cerevisiae strain, YJM789, by analyzing haploid segregants generated...
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