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Research: Hominoid fission of chromosome 14/15 and the role of segmental duplications
- Giuliana Giannuzzi,
- Michele Pazienza,
- John Huddleston,
- Francesca Antonacci,
- Maika Malig,
- Laura Vives,
- Evan E. Eichler,
- and Mario Ventura
Genome Res. November 2013 23: 1763-1773; Published in Advance September 27, 2013, doi:10.1101/gr.156240.113
...factors regulates accessibility. Trends Genet 18: 252–258. Eichler EE, Archidiacono N, Rocchi M. 1999. CAGGG repeats and the pericentromeric duplication of the hominoid . Genome Res 9: 1048–1058. Fallin MD, Lasseter VK, Wolyniec PS, McGrath JA, Nestadt G, Valle D, Liang KY, Pulver AE. 2003. Genomewide...
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LETTER: Pericentromeric Duplications in the Laboratory Mouse
- James W. Thomas,
- Mary G. Schueler,
- Tyrone J. Summers,
- Robert W. Blakesley,
- Jennifer C. McDowell,
- Pamela J. Thomas,
- Jacquelyn R. Idol,
- Valerie V.B. Maduro,
- Shih-Queen Lee-Lin,
- Jeffrey W. Touchman,
- Gerard G. Bouffard,
- Stephen M. Beckstrom-Sternberg,
- NISC Comparative Sequencing Program,
- and Eric D. Green
Genome Res. January 1, 2003 13: 55-63; Published in Advance December 30, 2002, doi:10.1101/gr.791403
.... , Nelson D.L. , Mohrenweiser H.W. ( 1997 ) Interchromosomal duplications of the adrenoleukodystrophy locus: A phenomenon of pericentromeric plasticity. Hum. Mol. Genet. 6 : 991 – 1002 . ↵ Eichler E.E. , Archidiacono N. , Rocchi M. ( 1999 ) CAGGG repeats and the pericentromeric duplication of the hominoid...
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LETTER: Human Paralogs of KIAA0187 Were Created through Independent Pericentromeric-Directed and Chromosome-Specific Duplication Mechanisms
- Moira Crosier,
- Luigi Viggiano,
- Jane Guy,
- Doriana Misceo,
- Robert Stones,
- Wenbin Wei,
- Tom Hearn,
- Mario Ventura,
- Nicoletta Archidiacono,
- Mariano Rocchi,
- and Michael S. Jackson
Genome Res. January 1, 2002 12: 67-80; doi:10.1101/gr.213702
...map to 22q11 ( Dunham et al. 1999 ): one proximal to the satellite 3 array on this chromosome, the other linked to CAGGG and HSREP522 repeat sequences, which have been implicated in pericentromeric duplication events ( Eichler et al. 1999 ). Furthermore, analysis of monochromosomal somatic cell...
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ARTICLE: Interchromosomal segmental duplications of the pericentromeric region on the human Y chromosome
- Stefan Kirsch,
- Birgit Weiß,
- Tracie L. Miner,
- Robert H. Waterston,
- Royden A. Clark,
- Evan E. Eichler,
- Claudia Münch,
- Werner Schempp,
- and Gudrun Rappold
Genome Res. February 2005 15: 195-204; Published in Advance January 14, 2005, doi:10.1101/gr.3302705
...-promoting CAGGG repeats are prone to chromosomal rearrangements ( Ji et al. 2000 ; Samonte and Eichler 2002 ; Stankiewicz and Lupski 2002 ). These rearrangements might lead to an abnormal phenotype by disruption or dosage alteration of the involved genes. Therefore, investigation of the eight potential genes...
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LETTER: The Mosaic Structure of Human Pericentromeric DNA: A Strategy for Characterizing Complex Regions of the Human Genome
- Juliann E. Horvath,
- Stuart Schwartz,
- and Evan E. Eichler
Genome Res. June 1, 2000 10: 839-852; doi:10.1101/gr.10.6.839
...Western Reserve School of Medicine and University Hospitals of Cleveland, Cleveland, Ohio 44106 USA Abstract The pericentromeric regions of human chromosomes pose particular problems for both mapping and sequencing. These difficulties are due, in large part, to the presence of duplicated genomic...
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ARTICLE: Genomic Sequence and Transcriptional Profile of the Boundary Between Pericentromeric Satellites and Genes on Human Chromosome Arm 10p
- Jane Guy,
- Tom Hearn,
- Moira Crosier,
- Jonathan Mudge,
- Luigi Viggiano,
- Dirk Koczan,
- Hans-Jurgen Thiesen,
- Jeffrey A. Bailey,
- Julie E. Horvath,
- Evan E. Eichler,
- Mark E. Earthrowl,
- Panos Deloukas,
- Lisa French,
- Jane Rogers,
- David Bentley,
- and Michael S. Jackson
Genome Res. February 1, 2003 13: 159-172; Published in Advance January 14, 2003, doi:10.1101/gr.644503
...). Consistent with this, the distribution of some duplications correlates with the distribution of specific repeats including α satellite superfamily 2 ( Regnier et al. 1997 ), CAGGG repeats ( Eichler et al. 1999 ) and satellite 3 ( Guy et al. 2000 ). Second, repeated rounds of duplication have created tracts...
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LETTER: Punctuated duplication seeding events during the evolution of human chromosome 2p11
- Julie E. Horvath,
- Cassandra L. Gulden,
- Rhea U. Vallente,
- Marla Y. Eichler,
- Mario Ventura,
- John D. McPherson,
- Tina A. Graves,
- Richard K. Wilson,
- Stuart Schwartz,
- Mariano Rocchi,
- and Evan E. Eichler
Genome Res. July 2005 15: 914-927; Published in Advance June 17, 2005, doi:10.1101/gr.3916405
....L., and Mohrenweiser, H.W. 1997 . Interchromosomal duplications of the adrenoleukodystrophy locus: A phenomenon of pericentromeric plasticity. Hum. Mol. Genet. 6 : 991 -1002. ↵ Eichler, E., Archidiacono, N., and Rocchi, M. 1999 . CAGGG repeats and the pericentromeric duplication of the hominoid . Genome Res. 9 : 1048...
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LETTER: Comprehensive Genome Sequence Analysis of a Breast Cancer Amplicon
- Colin Collins,
- Stanislav Volik,
- David Kowbel,
- David Ginzinger,
- Bauke Ylstra,
- Thomas Cloutier,
- Trevor Hawkins,
- Paul Predki,
- Christopher Martin,
- Meredith Wernick,
- Wen-Lin Kuo,
- Arthur Alberts,
- and Joe W. Gray
Genome Res. June 1, 2001 11: 1034-1042; Published in Advance May 8, 2001, doi:10.1101/gr.174301
...and the Pericentromeric Duplication of the Hominoid Genome. Genome Res. 9 : 1048 – 1058 . ↵ Ginzinger D.G. , Godfrey T.E. , Nigro J. , Moore D.H. , Suzuki S. , Pallavicini M.G. , Gray J.W. , Jensen R.H. ( 2000 ) Measurement of DNA copy number at microsatellite loci using quantitative PCR analysis. Cancer Res. 60 : 5405...
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LETTER: Segmental Duplications: Organization and Impact Within the Current Human Genome Project Assembly
- Jeffrey A. Bailey,
- Amy M. Yavor,
- Hillary F. Massa,
- Barbara J. Trask,
- and Evan E. Eichler
Genome Res. June 1, 2001 11: 1005-1017; Published in Advance May 8, 2001, doi:10.1101/gr.187101
...; Eichler 1998 ; Trask et al. 1998a ; Jackson et al. 1999 ; Ji et al. 1999 ). These data suggest numerous interchromosomal exchanges during recent hominoid evolution with apparent biases into and between pericentromeric and subtelomeric regions ( Eichler et al. 1997 , 1999 ; Monfouilloux et al. 1998 ; Trask...
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LETTER: Analysis of the Cat Eye Syndrome Critical Region in Humans and the Region of Conserved Synteny in Mice: A Search for Candidate Genes at or near the Human Chromosome 22 Pericentromere
- Tim K. Footz,
- Polly Brinkman-Mills,
- Graham S. Banting,
- Stephanie A. Maier,
- M. Ali Riazi,
- Lindsay Bridgland,
- Song Hu,
- Bruce Birren,
- Shinsei Minoshima,
- Nobuyoshi Shimizu,
- HuaQin Pan,
- Thuan Nguyen,
- Fang Fang,
- Ying Fu,
- Linda Ray,
- Hui Wu,
- Steve Shaull,
- Stacey Phan,
- Ziyun Yao,
- Feng Chen,
- Axin Huan,
- Ping Hu,
- Qiaoyan Wang,
- Phoebe Loh,
- Sulan Qi,
- Bruce A. Roe,
- and Heather E. McDermid
Genome Res. June 1, 2001 11: 1053-1070; doi:10.1101/gr.154901
...by which gene duplication recruitment occurs has recently been speculated to be driven by recombinogenic structures composed of an array of CAGGG elements and various subtelomeric-like repeats ( Eichler et al. 1999 ). This is not apparent in the duplication region examined in this study. Although a cluster...

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