Searching journal content for articles similar to Cooper et al. 20 (9): 1288.

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  1. Research: Unique genetic basis of the distinct antibiotic potency of high acetic acid production in the probiotic yeast Saccharomyces cerevisiae var. boulardii
    • Benjamin Offei,
    • Paul Vandecruys,
    • Stijn De Graeve,
    • María R. Foulquié-Moreno,
    • and Johan M. Thevelein
    Genome Res. September 2019 29: 1478-1494; Published in Advance August 29, 2019, doi:10.1101/gr.243147.118
    ...obscure. It is considered conspecific with budding yeast Saccharomyces cerevisiae, which is generally used in classical food applications. They have an almost identical sequence, making the genetic basis of probiotic potency in S. boulardii puzzling. We now show that S. boulardii produces at 37°C...
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  2. Research: Fitness benefits of loss of heterozygosity in Saccharomyces hybrids
    • Samuel M. Lancaster,
    • Celia Payen,
    • Caiti Smukowski Heil,
    • and Maitreya J. Dunham
    Genome Res. October 2019 29: 1685-1692; Published in Advance September 23, 2019, doi:10.1101/gr.245605.118
    ...that are beneficial when lost in order to determine how prevalent this mode of adaptation may be and to determine candidate loci that might underlie the benefits of larger-scale chromosome rearrangements. These aims were accomplished by mating Saccharomyces uvarum with the S. cerevisiae deletion collection to create...
  3. Research: Cell type–specific analysis by single-cell profiling identifies a stable mammalian tRNA–mRNA interface and increased translation efficiency in neurons
    • William Gao,
    • Carlos J. Gallardo-Dodd,
    • and Claudia Kutter
    Genome Res. January 2022 32: 97-110; Published in Advance December 2, 2021, doi:10.1101/gr.275944.121
    ...pools may influence the elongation rate. Indeed, it has been shown in bacteria such as Escherichia coli and unicellular eukaryotes such as Saccharomyces cerevisiae that matching of these pools results in increased translation efficiency, leading to higher production of proteins. Conversely, mismatching...
  4. Research: Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments
    • Barbara Dunn,
    • Chandra Richter,
    • Daniel J. Kvitek,
    • Tom Pugh,
    • and Gavin Sherlock
    Genome Res. May 2012 22: 908-924; Published in Advance February 27, 2012, doi:10.1101/gr.130310.111
    ...Analysis of the Saccharomyces cerevisiae pan- reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments Barbara Dunn1, Chandra Richter2, Daniel J. Kvitek1, Tom Pugh2 and Gavin Sherlock1,3 1Department of Genetics, Stanford University, Stanford...
  5. Research: A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon
    • Joshua A. Baller,
    • Jiquan Gao,
    • Radostina Stamenova,
    • M. Joan Curcio,
    • and Daniel F. Voytas
    Genome Res. April 2012 22: 704-713; Published in Advance January 4, 2012, doi:10.1101/gr.129585.111
    .... Shading around each spline denotes error for the approximation at P = 0.05. Baller et al. 710 Genome Research www..org High-throughput mapping of insertion sites in mutant strains Another advantage of S. cerevisiae as an experimental system is the wealth of genetic resources that can be applied to better...
  6. Letter: High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe
    • Yabin Guo and
    • Henry L. Levin
    Genome Res. February 2010 20: 239-248; Published in Advance December 29, 2009, doi:10.1101/gr.099648.109
    ...High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe Yabin Guo and Henry L. Levin 1 Section on Eukaryotic Transposable Elements, Laboratory of Gene Regulation and Development...
  7. LETTER: Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae
    • Markus J. Herrgård,
    • Baek-Seok Lee,
    • Vasiliy Portnoy,
    • and Bernhard Ø. Palsson
    Genome Res. May 2006 16: 627-635; Published in Advance April 10, 2006, doi:10.1101/gr.4083206
    ...), metabolite level ( Villas-Boas et al. 2005 ), metabolic flux ( Sauer 2004 ), and high-throughput deletion strain phenotyping ( Giaever et al. 2002 ) data represent the states and outputs of these networks. Connecting large-scale component and interaction information to data on system states in order...
  8. Method: High-resolution genotype-free mapping of genetic variation with CRI-SPA-Map
    • Sheila Lutz,
    • Megan Lawler,
    • Samuel Amidon,
    • and Frank W Albert
    Genome Res. March 23, 2026 gr.281514.125; Published in Advance March 23, 2026, doi:10.1101/gr.281514.125
    ...differences is costly and challenging. Here, we introduce CRI-15 SPA-Map, a genetic mapping strategy combining CRISPR-Cas9 engineering, selective 16 ploidy ablation (SPA), and high-throughput phenotyping for precise genetic mapping with or 17 without genotyping in the yeast Saccharomyces cerevisiae. In CRI...
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  9. RESOURCE: Large-Scale Discovery of Induced Point Mutations With High-Throughput TILLING
    • Bradley J. Till,
    • Steven H. Reynolds,
    • Elizabeth A. Greene,
    • Christine A. Codomo,
    • Linda C. Enns,
    • Jessica E. Johnson,
    • Chris Burtner,
    • Anthony R. Odden,
    • Kim Young,
    • Nicholas E. Taylor,
    • Jorja G. Henikoff,
    • Luca Comai,
    • and Steven Henikoff
    Genome Res. March 1, 2003 13: 524-530; doi:10.1101/gr.977903
    ....M. , Ni L. , Connelly C. , Riles L. , Veronneau S. , Dow S. , Lucau-Danila A. , Anderson K. , Andre B. , et al. ( 2002 ) Functional profiling of the Saccharomyces cerevisiae . Nature 418 : 387 – 391 . ↵ Henikoff J.G. , Greene E.A. , Pietrokovski S. , Henikoff S. ( 2000 ) Increased coverage of protein...
  10. LETTER: Metabolic functions of duplicate genes in Saccharomyces cerevisiae
    • Lars Kuepfer,
    • Uwe Sauer,
    • and Lars M. Blank
    Genome Res. October 2005 15: 1421-1430; doi:10.1101/gr.3992505
    .... Glossary of terms. Machine Learn. 30 : 271 -274. Ramos, F. and Wiame, J.M. 1980 . Two asparagine synthetases in Saccharomyces cerevisiae. Eur. J. Biochem. 108 : 373 -377. ↵ Sauer, U. 2004 . High-throughput phenomics: Experimental methods for mapping fluxomes. Curr. Opin. Biotechnol. 15 : 58 -63. ↵ Sauer, U...
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