Searching journal content for articles similar to Bowen et al. 13 (9): 1984.

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Research: Reactivation of transposable elements following hybridization in fission yeast
- Sergio Tusso,
- Fang Suo,
- Yue Liang,
- Li-Lin Du,
- and Jochen B.W. Wolf
Genome Res. February 2022 32: 324-336; Published in Advance December 14, 2021, doi:10.1101/gr.276056.121
...present in both ancestral backgrounds. However, the functional significance of this insertion is not clear and warrants future experimental exploration.Overall, this study offers a comprehensive characterization of the global diversity of transposable elements in S. pombe. Phylogenetic and population...
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Resource: Zebrafish transposable elements show extensive diversification in age, genomic distribution, and developmental expression
- Ni-Chen Chang,
- Quirze Rovira,
- Jonathan Wells,
- Cédric Feschotte,
- and Juan M. Vaquerizas
Genome Res. July 2022 32: 1408-1423; Published in Advance January 5, 2022, doi:10.1101/gr.275655.121
...they are less common nearby or within genes than DNA transposons, because their promoters and other cis-regulatory elements have greater potential to interfere with gene expression. Similarly, we found that SINEs, which are usually transcribed by RNA pol III and therefore less likely to interfere with pol II...
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Letter: High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe
- Yabin Guo and
- Henry L. Levin
Genome Res. February 2010 20: 239-248; Published in Advance December 29, 2009, doi:10.1101/gr.099648.109
...High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe Yabin Guo and Henry L. Levin 1 Section on Eukaryotic Transposable Elements, Laboratory of Gene Regulation and Development...
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Research: Genome-wide mapping of nuclear mitochondrial DNA sequences links DNA replication origins to chromosomal double-strand break formation in Schizosaccharomyces pombe
- Sandrine Lenglez,
- Damien Hermand,
- and Anabelle Decottignies
Genome Res. September 2010 20: 1250-1261; Published in Advance August 5, 2010, doi:10.1101/gr.104513.109
...Genome-wide mapping of nuclear mitochondrial DNA sequences links DNA replication origins to chromosomal double-strand break formation in Schizosaccharomyces pombe Sandrine Lenglez 1 , Damien Hermand 2 and Anabelle Decottignies 1 , 3 1 Catholic...
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LETTER: Chromodomains direct integration of retrotransposons to heterochromatin
- Xiang Gao,
- Yi Hou,
- Hirotaka Ebina,
- Henry L. Levin,
- and Daniel F. Voytas
Genome Res. March 2008 18: 359-369; Published in Advance February 6, 2008, doi:10.1101/gr.7146408
...with histone H3 dimethyl- and trimethyl-K9, and when the MAGGY chromodomain is fused to integrase of the Schizosaccharomyces pombe Tf1 retrotransposon, new Tf1 insertions are directed to sites of H3 K9 methylation. Repetitive sequences such as transposable elements trigger the RNAi pathway resulting...
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Research: Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots
- Loris Mularoni,
- Yulian Zhou,
- Tyson Bowen,
- Sunil Gangadharan,
- Sarah J. Wheelan,
- and Jef D. Boeke
Genome Res. April 2012 22: 693-703; Published in Advance January 4, 2012, doi:10.1101/gr.129460.111
.... Abstract The Saccharomyces cerevisiae genome contains about 35 copies of dispersed retrotransposons called Ty1 elements. Ty1 elements target regions upstream of tRNA genes and other Pol III-transcribed genes when retrotransposing to new sites. We used deep sequencing of Ty1-flanking sequence amplicons...
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Research: A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon
- Joshua A. Baller,
- Jiquan Gao,
- Radostina Stamenova,
- M. Joan Curcio,
- and Daniel F. Voytas
Genome Res. April 2012 22: 704-713; Published in Advance January 4, 2012, doi:10.1101/gr.129585.111
..., and this tethers the integration complex to specific genomic sites, resulting in target-site biases (Bushman 2003). Examples of retrotransposons that recognize chromatin during integration include the Schizosaccharomyces pombe Tf1 retrotransposon and the S. cerevisiae Ty3 retrotransposon, which integrate upstream...
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Method: Mapping genomic hotspots of DNA damage by a single-strand-DNA-compatible and strand-specific ChIP-seq method
- Zhi-Xiong Zhou,
- Mei-Jun Zhang,
- Xu Peng,
- Yuko Takayama,
- Xing-Ya Xu,
- Ling-Zhi Huang,
- and Li-Lin Du
Genome Res. April 2013 23: 705-715; Published in Advance December 17, 2012, doi:10.1101/gr.146357.112
...–206. BowenNJ, Jordan IK, Epstein JA,Wood V, Levin HL. 2003. Retrotransposons and their recognition of pol II promoters: A comprehensive survey of the transposable elements from the complete sequence of Schizosaccharomyces pombe. Genome Res 13: 1984–1997. Buhler C, Borde V, Lichten M. 2007. Mapping meiotic...
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ARTICLE: Multiple LTR-Retrotransposon Families in the Asexual Yeast Candida albicans
- Timothy J.D. Goodwin and
- Russell T.M. Poulter
Genome Res. February 1, 2000 10: 174-191; doi:10.1101/gr.10.2.174
...retrotransposon comprises ∼15% of the human ( Kazazian and Moran 1998 ), and are known to cause mutations and promote genomic alterations (e.g., Zou et al. 1996b ). The yeast Saccharomyces cerevisiae has five families of retrotransposons, which are collectively referred to as Ty elements ( Boeke and Sandmeyer...

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