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INSIGHT/OUTLOOK: Indian Caste Origins: Genomic Insights and Future Outlook
- Partha P. Majumder
Genome Res. June 1, 2001 11: 931-932; doi:10.1101/gr.192401
...bearing on the origins of the Indian castes, it would be a good idea to include tribal populations inhabiting the same region along with the caste populations. E-MAIL ppm@isical.ac.in ; FAX 91-33-577 3049. Article and publication are at www..org/cgi/doi/10.1101/gr.192401. REFERENCES Bamshad M. Kivisild T...
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Method: Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations
- David J. Witherspoon,
- Yuhua Zhang,
- Jinchuan Xing,
- W. Scott Watkins,
- Hongseok Ha,
- Mark A. Batzer,
- and Lynn B. Jorde
Genome Res. July 2013 23: 1170-1181; Published in Advance April 18, 2013, doi:10.1101/gr.148973.112
...to polymorphic Alu insertions across populations in Figure 4. Individuals cluster according to their continent and population of origin, as in previous analyses of different genetic markers from these same individuals (Witherspoon et al. 2006; Xing et al. 2009a). However, the Irula, Mala, and Madiga samples were...
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Resource: Singapore Genome Variation Project: A haplotype map of three Southeast Asian populations
- Yik-Ying Teo,
- Xueling Sim,
- Rick T.H. Ong,
- Adrian K.S. Tan,
- Jieming Chen,
- Erwin Tantoso,
- Kerrin S. Small,
- Chee-Seng Ku,
- Edmund J.D. Lee,
- Mark Seielstad,
- and Kee-Seng Chia
Genome Res. November 2009 19: 2154-2162; Published in Advance August 21, 2009, doi:10.1101/gr.095000.109
...Variation Project (SGVP) provides a publicly available resource of 1.6 million single nucleotide polymorphisms (SNPs) genotyped in 268 individuals from the Chinese, Malay, and Indian population groups in Southeast Asia. This online database catalogs information and summaries on genotype and phased haplotype...
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LETTER: Genetic Variation Among World Populations: Inferences From 100 Alu Insertion Polymorphisms
- W. Scott Watkins,
- Alan R. Rogers,
- Christopher T. Ostler,
- Steve Wooding,
- Michael J. Bamshad,
- Anna-Marie E. Brassington,
- Marion L. Carroll,
- Son V. Nguyen,
- Jerilyn A. Walker,
- B.V. Ravi Prasad,
- P. Govinda Reddy,
- Pradipta K. Das,
- Mark A. Batzer,
- and Lynn B. Jorde
Genome Res. July 2003 13: 1607-1618; Published in Advance June 12, 2003, doi:10.1101/gr.894603
...October 10, 2002. Cold Spring Harbor Laboratory Press References ↵ Bamshad, M., Kivisild, T., Watkins, W.S., Dixon, M.E., Ricker, C.E., Rao, B.B., Naiad, J.M., Prasad, B.V., Reddy, P.G., Rasanayagam, A., et al. 2001 . Genetic evidence on the origins of Indian caste populations. Genome Res. 11 : 994 -1004...
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Research: Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization
- Kazuaki Yamaguchi,
- Yoshinobu Uno,
- Mitsutaka Kadota,
- Osamu Nishimura,
- Ryo Nozu,
- Kiyomi Murakumo,
- Rui Matsumoto,
- Keiichi Sato,
- and Shigehiro Kuraku
Genome Res. September 2023 33: 1527-1540; Published in Advance August 17, 2023, doi:10.1101/gr.276840.122
...of fissions that occurred in the elasmobranch lineage (Fig. 3C; Supplemental Fig. 3). These results cast doubt on the common origins of microchromosomes among chicken, spotted gar, and zebra shark and indicate a more drastic reorganization of karyotypes at the base of jawed vertebrates than previously...
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ARTICLES: Distribution and evolution of CTG repeats at the myotonin protein kinase gene in human populations.
- R Deka,
- P P Majumder,
- M D Shriver,
- D N Stivers,
- Y Zhong,
- L M Yu,
- R Barrantes,
- S J Yin,
- T Miki,
- J Hundrieser,
- C H Bunker,
- S T McGarvey,
- S Sakallah,
- R E Ferrell,
- and R Chakraborty
Genome Res. February 1996 6: 142-154; doi:10.1101/gr.6.2.142
.... . . . . . . . See Table 2 for additional explanation. a(DG) Dogrib; (CA) Cabecar; (PH) Pehuenche Indian. bZz for D is significant at P < 0.01. cz2 for D is significant at P < 0.05. association with the intragenic Alu (+/-) poly- morphism in the examined populations provide insight into the evolutionary origin...
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Letter: Fine-scaled human genetic structure revealed by SNP microarrays
- Jinchuan Xing,
- W. Scott Watkins,
- David J. Witherspoon,
- Yuhua Zhang,
- Stephen L. Guthery,
- Rangaswamy Thara,
- Bryan J. Mowry,
- Kazima Bulayeva,
- Robert B. Weiss,
- and Lynn B. Jorde
Genome Res. May 2009 19: 815-825; doi:10.1101/gr.085589.108
...among Indian caste and tribal populations and between highland and lowland Daghestani populations. In particular, upper-caste individuals from Tamil Nadu and Andhra Pradesh form one defined group, lower-caste individuals from these two states form another, and the tribal Irula samples form a third. Our...
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LETTER: Ethnic India: A Genomic View, With Special Reference to Peopling and Structure
- Analabha Basu,
- Namita Mukherjee,
- Sangita Roy,
- Sanghamitra Sengupta,
- Sanat Banerjee,
- Madan Chakraborty,
- Badal Dey,
- Monami Roy,
- Bidyut Roy,
- Nitai P. Bhattacharyya,
- Susanta Roychoudhury,
- and Partha P. Majumder
Genome Res. October 2003 13: 2277-2290; doi:10.1101/gr.1413403
...of Indian culture and society ( Meenakshi 1995 ). Indian culture and society are also known to have been affected by multiple waves of migration and gene flow that took place in historic and prehistoric times ( Ratnagar 1995 ; Thapar 1995 ). In a recent study conducted on ranked caste populations sampled...
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RESEARCH: Negligible Male Gene Flow Across Ethnic Boundaries in India, Revealed by Analysis of Y-Chromosomal DNA Polymorphisms
- Nitai Pada Bhattacharyya,
- Priyadarshi Basu,
- Madhusudan Das,
- Srimanta Pramanik,
- Rajat Banerjee,
- Bidyut Roy,
- Susanta Roychoudhury,
- and Partha P. Majumder
Genome Res. August 1, 1999 9: 711-719; doi:10.1101/gr.9.8.711
...the northern Indian populations of Uttar Pradesh (Brahmin, Chamar, and Rajput), the total number of distinct haplotypes was 35, of which only 3 (8.6%) were shared among the populations (1 haplotype was shared between the upper caste Brahmin and middle caste Rajput; 2 were shared between Rajput and lower caste...
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Research: Human population dispersal “Out of Africa” estimated from linkage disequilibrium and allele frequencies of SNPs
- Brian P. McEvoy,
- Joseph E. Powell,
- Michael E. Goddard,
- and Peter M. Visscher
Genome Res. June 2011 21: 821-829; Published in Advance April 25, 2011, doi:10.1101/gr.119636.110
..., Adojaan M, Tolk HV, Stepanov V, et al. 2003. The genetic heritage of the earliest settlers persists both in Indian tribal and caste populations. Am J Hum Genet 72: 313–332. Lahr MM, Foley RA. 1998. Towards a theory of modern human origins: Geography, demography, and diversity in recent human evolution. Am...

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