Searching journal content for John D. McPherson in author.

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  1. Research: Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
    • Maria Nattestad,
    • Sara Goodwin,
    • Karen Ng,
    • Timour Baslan,
    • Fritz J. Sedlazeck,
    • Philipp Rescheneder,
    • Tyler Garvin,
    • Han Fang,
    • James Gurtowski,
    • Elizabeth Hutton,
    • Elizabeth Tseng,
    • Chen-Shan Chin,
    • Timothy Beck,
    • Yogi Sundaravadanam,
    • Melissa Kramer,
    • Eric Antoniou,
    • John D. McPherson,
    • James Hicks,
    • W. Richard McCombie,
    • and Michael C. Schatz
    Genome Res. August 2018 28: 1126-1135; Published in Advance June 28, 2018, doi:10.1101/gr.231100.117
  2. Resource: The completion of the Mammalian Gene Collection (MGC)
    • The MGC Project Team,
    • Gary Temple,
    • Daniela S. Gerhard,
    • Rebekah Rasooly,
    • Elise A. Feingold,
    • Peter J. Good,
    • Cristen Robinson,
    • Allison Mandich,
    • Jeffrey G. Derge,
    • Jeanne Lewis,
    • Debonny Shoaf,
    • Francis S. Collins,
    • Wonhee Jang,
    • Lukas Wagner,
    • Carolyn M. Shenmen,
    • Leonie Misquitta,
    • Carl F. Schaefer,
    • Kenneth H. Buetow,
    • Tom I. Bonner,
    • Linda Yankie,
    • Ming Ward,
    • Lon Phan,
    • Alex Astashyn,
    • Garth Brown,
    • Catherine Farrell,
    • Jennifer Hart,
    • Melissa Landrum,
    • Bonnie L. Maidak,
    • Michael Murphy,
    • Terence Murphy,
    • Bhanu Rajput,
    • Lillian Riddick,
    • David Webb,
    • Janet Weber,
    • Wendy Wu,
    • Kim D. Pruitt,
    • Donna Maglott,
    • Adam Siepel,
    • Brona Brejova,
    • Mark Diekhans,
    • Rachel Harte,
    • Robert Baertsch,
    • Jim Kent,
    • David Haussler,
    • Michael Brent,
    • Laura Langton,
    • Charles L.G. Comstock,
    • Michael Stevens,
    • Chaochun Wei,
    • Marijke J. van Baren,
    • Kourosh Salehi-Ashtiani,
    • Ryan R. Murray,
    • Lila Ghamsari,
    • Elizabeth Mello,
    • Chenwei Lin,
    • Christa Pennacchio,
    • Kirsten Schreiber,
    • Nicole Shapiro,
    • Amber Marsh,
    • Elizabeth Pardes,
    • Troy Moore,
    • Anita Lebeau,
    • Mike Muratet,
    • Blake Simmons,
    • David Kloske,
    • Stephanie Sieja,
    • James Hudson,
    • Praveen Sethupathy,
    • Michael Brownstein,
    • Narayan Bhat,
    • Joseph Lazar,
    • Howard Jacob,
    • Chris E. Gruber,
    • Mark R. Smith,
    • John McPherson,
    • Angela M. Garcia,
    • Preethi H. Gunaratne,
    • Jiaqian Wu,
    • Donna Muzny,
    • Richard A. Gibbs,
    • Alice C. Young,
    • Gerard G. Bouffard,
    • Robert W. Blakesley,
    • Jim Mullikin,
    • Eric D. Green,
    • Mark C. Dickson,
    • Alex C. Rodriguez,
    • Jane Grimwood,
    • Jeremy Schmutz,
    • Richard M. Myers,
    • Martin Hirst,
    • Thomas Zeng,
    • Kane Tse,
    • Michelle Moksa,
    • Merinda Deng,
    • Kevin Ma,
    • Diana Mah,
    • Johnson Pang,
    • Greg Taylor,
    • Eric Chuah,
    • Athena Deng,
    • Keith Fichter,
    • Anne Go,
    • Stephanie Lee,
    • Jing Wang,
    • Malachi Griffith,
    • Ryan Morin,
    • Richard A. Moore,
    • Michael Mayo,
    • Sarah Munro,
    • Susan Wagner,
    • Steven J.M. Jones,
    • Robert A. Holt,
    • Marco A. Marra,
    • Sun Lu,
    • Shuwei Yang,
    • James Hartigan,
    • Marcus Graf,
    • Ralf Wagner,
    • Stanley Letovksy,
    • Jacqueline C. Pulido,
    • Keith Robison,
    • Dominic Esposito,
    • James Hartley,
    • Vanessa E. Wall,
    • Ralph F. Hopkins,
    • Osamu Ohara,
    • and Stefan Wiemann
    Genome Res. December 2009 19: 2324-2333; Published in Advance September 18, 2009, doi:10.1101/gr.095976.109
  3. LETTER: Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA
    • Yulia Korshunova,
    • Rebecca K. Maloney,
    • Nathan Lakey,
    • Robert W. Citek,
    • Blaire Bacher,
    • Arief Budiman,
    • Jared M. Ordway,
    • W. Richard McCombie,
    • Jorge Leon,
    • Jeffrey A. Jeddeloh,
    • and John D. McPherson
    Genome Res. January 2008 18: 19-29; Published in Advance November 21, 2007, doi:10.1101/gr.6883307
    OPEN ACCESS ARTICLE
  4. LETTER: Punctuated duplication seeding events during the evolution of human chromosome 2p11
    • Julie E. Horvath,
    • Cassandra L. Gulden,
    • Rhea U. Vallente,
    • Marla Y. Eichler,
    • Mario Ventura,
    • John D. McPherson,
    • Tina A. Graves,
    • Richard K. Wilson,
    • Stuart Schwartz,
    • Mariano Rocchi,
    • and Evan E. Eichler
    Genome Res. July 2005 15: 914-927; Published in Advance June 17, 2005, doi:10.1101/gr.3916405
  5. Methods: Fosmid-Based Physical Mapping of the Histoplasma capsulatum Genome
    • Vincent Magrini,
    • Wesley C. Warren,
    • John Wallis,
    • William E. Goldman,
    • Jian Xu,
    • Elaine R. Mardis,
    • and John D. McPherson
    Genome Res. August 2004 14: 1603-1609; doi:10.1101/gr.2361404
  6. RESOURCE: Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome
    • Martin Krzywinski,
    • John Wallis,
    • Claudia Gösele,
    • Ian Bosdet,
    • Readman Chiu,
    • Tina Graves,
    • Oliver Hummel,
    • Dan Layman,
    • Carrie Mathewson,
    • Natasja Wye,
    • Baoli Zhu,
    • Derek Albracht,
    • Jennifer Asano,
    • Sarah Barber,
    • Mabel Brown-John,
    • Susanna Chan,
    • Steve Chand,
    • Alison Cloutier,
    • Jonathon Davito,
    • Chris Fjell,
    • Tony Gaige,
    • Detlev Ganten,
    • Noreen Girn,
    • Kurtis Guggenheimer,
    • Heinz Himmelbauer,
    • Thomas Kreitler,
    • Stephen Leach,
    • Darlene Lee,
    • Hans Lehrach,
    • Michael Mayo,
    • Kelly Mead,
    • Teika Olson,
    • Pawan Pandoh,
    • Anna-Liisa Prabhu,
    • Heesun Shin,
    • Simone Tänzer,
    • Jason Thompson,
    • Miranda Tsai,
    • Jason Walker,
    • George Yang,
    • Mandeep Sekhon,
    • LaDeana Hillier,
    • Heike Zimdahl,
    • Andre Marziali,
    • Kazutoyo Osoegawa,
    • Shaying Zhao,
    • Asim Siddiqui,
    • Pieter J. de Jong,
    • Wes Warren,
    • Elaine Mardis,
    • John D. McPherson,
    • Richard Wilson,
    • Norbert Hübner,
    • Steven Jones,
    • Marco Marra,
    • and Jacqueline Schein
    Genome Res. April 2004 14: 766-779; doi:10.1101/gr.2336604
  7. METHODS: Software for Automated Analysis of DNA Fingerprinting Gels
    • Daniel R. Fuhrmann,
    • Martin I. Krzywinski,
    • Readman Chiu,
    • Parvaneh Saeedi,
    • Jacqueline E. Schein,
    • Ian E. Bosdet,
    • Asif Chinwalla,
    • LaDeana W. Hillier,
    • Robert H. Waterston,
    • John D. McPherson,
    • Steven J.M. Jones,
    • and Marco A. Marra
    Genome Res. May 1, 2003 13: 940-953; doi:10.1101/gr.904303
  8. INSIGHT/OUTLOOK: What is Finished, and Why Does it Matter
    • Elaine Mardis,
    • John McPherson,
    • Robert Martienssen,
    • Richard K. Wilson,
    • and W. Richard McCombie
    Genome Res. May 1, 2002 12: 669-671; doi:10.1101/gr.032102
  9. RESOURCE: The LN54 Radiation Hybrid Map of Zebrafish Expressed Sequences
    • Neil Hukriede,
    • Dan Fisher,
    • Jonathan Epstein,
    • Lucille Joly,
    • Patricia Tellis,
    • Yi Zhou,
    • Brad Barbazuk,
    • Kristine Cox,
    • Laura Fenton-Noriega,
    • Candace Hersey,
    • Jennifer Miles,
    • Xiaoming Sheng,
    • Anhua Song,
    • Rick Waterman,
    • Stephen L. Johnson,
    • Igor B. Dawid,
    • Mario Chevrette,
    • Leonard I. Zon,
    • John McPherson,
    • and Marc Ekker
    Genome Res. December 1, 2001 11: 2127-2132; Published in Advance November 12, 2001, doi:10.1101/gr.210601
  10. LETTER: The Syntenic Relationship of the Zebrafish and Human Genomes
    • W. Bradley Barbazuk,
    • Ian Korf,
    • Candy Kadavi,
    • Joshua Heyen,
    • Stephanie Tate,
    • Edmund Wun,
    • Joseph A. Bedell,
    • John D. McPherson,
    • and Stephen L. Johnson
    Genome Res. September 1, 2000 10: 1351-1358; doi:10.1101/gr.144700
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