Searching journal content for Eric A. Stone in author.

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  1. Resource: The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
    • Pooja K. Strope,
    • Daniel A. Skelly,
    • Stanislav G. Kozmin,
    • Gayathri Mahadevan,
    • Eric A. Stone,
    • Paul M. Magwene,
    • Fred S. Dietrich,
    • and John H. McCusker
    Genome Res. May 2015 25: 762-774; Published in Advance April 3, 2015, doi:10.1101/gr.185538.114
  2. Resource: Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines
    • Wen Huang,
    • Andreas Massouras,
    • Yutaka Inoue,
    • Jason Peiffer,
    • Miquel Ràmia,
    • Aaron M. Tarone,
    • Lavanya Turlapati,
    • Thomas Zichner,
    • Dianhui Zhu,
    • Richard F. Lyman,
    • Michael M. Magwire,
    • Kerstin Blankenburg,
    • Mary Anna Carbone,
    • Kyle Chang,
    • Lisa L. Ellis,
    • Sonia Fernandez,
    • Yi Han,
    • Gareth Highnam,
    • Carl E. Hjelmen,
    • John R. Jack,
    • Mehwish Javaid,
    • Joy Jayaseelan,
    • Divya Kalra,
    • Sandy Lee,
    • Lora Lewis,
    • Mala Munidasa,
    • Fiona Ongeri,
    • Shohba Patel,
    • Lora Perales,
    • Agapito Perez,
    • LingLing Pu,
    • Stephanie M. Rollmann,
    • Robert Ruth,
    • Nehad Saada,
    • Crystal Warner,
    • Aneisa Williams,
    • Yuan-Qing Wu,
    • Akihiko Yamamoto,
    • Yiqing Zhang,
    • Yiming Zhu,
    • Robert R.H. Anholt,
    • Jan O. Korbel,
    • David Mittelman,
    • Donna M. Muzny,
    • Richard A. Gibbs,
    • Antonio Barbadilla,
    • J. Spencer Johnston,
    • Eric A. Stone,
    • Stephen Richards,
    • Bart Deplancke,
    • and Trudy F.C. Mackay
    Genome Res. July 2014 24: 1193-1208; Published in Advance April 8, 2014, doi:10.1101/gr.171546.113
    OPEN ACCESS ARTICLE
  3. Method: Joint genotyping on the fly: Identifying variation among a sequenced panel of inbred lines
    • Eric A. Stone
    Genome Res. May 2012 22: 966-974; Published in Advance February 23, 2012, doi:10.1101/gr.129122.111
  4. Resource: ProPhylER: A curated online resource for protein function and structure based on evolutionary constraint analyses
    • Jonathan Binkley,
    • Kalpana Karra,
    • Andrew Kirby,
    • Midori Hosobuchi,
    • Eric A. Stone,
    • and Arend Sidow
    Genome Res. January 2010 20: 142-154; Published in Advance October 21, 2009, doi:10.1101/gr.097121.109
  5. ARTICLE: Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    • Elliott H. Margulies,
    • Gregory M. Cooper,
    • George Asimenos,
    • Daryl J. Thomas,
    • Colin N. Dewey,
    • Adam Siepel,
    • Ewan Birney,
    • Damian Keefe,
    • Ariel S. Schwartz,
    • Minmei Hou,
    • James Taylor,
    • Sergey Nikolaev,
    • Juan I. Montoya-Burgos,
    • Ari Löytynoja,
    • Simon Whelan,
    • Fabio Pardi,
    • Tim Massingham,
    • James B. Brown,
    • Peter Bickel,
    • Ian Holmes,
    • James C. Mullikin,
    • Abel Ureta-Vidal,
    • Benedict Paten,
    • Eric A. Stone,
    • Kate R. Rosenbloom,
    • W. James Kent,
    • Gerard G. Bouffard,
    • Xiaobin Guan,
    • Nancy F. Hansen,
    • Jacquelyn R. Idol,
    • Valerie V.B. Maduro,
    • Baishali Maskeri,
    • Jennifer C. McDowell,
    • Morgan Park,
    • Pamela J. Thomas,
    • Alice C. Young,
    • Robert W. Blakesley,
    • Donna M. Muzny,
    • Erica Sodergren,
    • David A. Wheeler,
    • Kim C. Worley,
    • Huaiyang Jiang,
    • George M. Weinstock,
    • Richard A. Gibbs,
    • Tina Graves,
    • Robert Fulton,
    • Elaine R. Mardis,
    • Richard K. Wilson,
    • Michele Clamp,
    • James Cuff,
    • Sante Gnerre,
    • David B. Jaffe,
    • Jean L. Chang,
    • Kerstin Lindblad-Toh,
    • Eric S. Lander,
    • Angie Hinrichs,
    • Heather Trumbower,
    • Hiram Clawson,
    • Ann Zweig,
    • Robert M. Kuhn,
    • Galt Barber,
    • Rachel Harte,
    • Donna Karolchik,
    • Matthew A. Field,
    • Richard A. Moore,
    • Carrie A. Matthewson,
    • Jacqueline E. Schein,
    • Marco A. Marra,
    • Stylianos E. Antonarakis,
    • Serafim Batzoglou,
    • Nick Goldman,
    • Ross Hardison,
    • David Haussler,
    • Webb Miller,
    • Lior Pachter,
    • Eric D. Green,
    • and Arend Sidow
    Genome Res. June 2007 17: 760-774; doi:10.1101/gr.6034307
    OPEN ACCESS ARTICLE
  6. ARTICLE: Distribution and intensity of constraint in mammalian genomic sequence
    • Gregory M. Cooper,
    • Eric A. Stone,
    • George Asimenos,
    • Eric D. Green,
    • Serafim Batzoglou,
    • and Arend Sidow
    Genome Res. July 2005 15: 901-913; Published in Advance June 17, 2005, doi:10.1101/gr.3577405
  7. Methods: Physicochemical constraint violation by missense substitutions mediates impairment of protein function and disease severity
    • Eric A. Stone and
    • Arend Sidow
    Genome Res. July 2005 15: 978-986; Published in Advance June 17, 2005, doi:10.1101/gr.3804205
  8. LETTER: Characterization of Evolutionary Rates and Constraints in Three Mammalian Genomes
    • Gregory M. Cooper,
    • Michael Brudno,
    • Eric A. Stone,
    • Inna Dubchak,
    • Serafim Batzoglou,
    • and Arend Sidow
    Genome Res. April 2004 14: 539-548; doi:10.1101/gr.2034704
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