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Eric A. Stone
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Resource
:
The 100-genomes strains, an
S. cerevisiae
resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
Pooja K. Strope
,
Daniel A. Skelly
,
Stanislav G. Kozmin
,
Gayathri Mahadevan
,
Eric A. Stone
,
Paul M. Magwene
,
Fred S. Dietrich
,
and
John H. McCusker
Genome Res.
May 2015
25
:
762
-
774
;
Published in Advance
April 3, 2015
,
doi:
10.1101/gr.185538.114
Abstract
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Resource
:
Natural variation in genome architecture among 205
Drosophila melanogaster
Genetic Reference Panel lines
Wen Huang
,
Andreas Massouras
,
Yutaka Inoue
,
Jason Peiffer
,
Miquel Ràmia
,
Aaron M. Tarone
,
Lavanya Turlapati
,
Thomas Zichner
,
Dianhui Zhu
,
Richard F. Lyman
,
Michael M. Magwire
,
Kerstin Blankenburg
,
Mary Anna Carbone
,
Kyle Chang
,
Lisa L. Ellis
,
Sonia Fernandez
,
Yi Han
,
Gareth Highnam
,
Carl E. Hjelmen
,
John R. Jack
,
Mehwish Javaid
,
Joy Jayaseelan
,
Divya Kalra
,
Sandy Lee
,
Lora Lewis
,
Mala Munidasa
,
Fiona Ongeri
,
Shohba Patel
,
Lora Perales
,
Agapito Perez
,
LingLing Pu
,
Stephanie M. Rollmann
,
Robert Ruth
,
Nehad Saada
,
Crystal Warner
,
Aneisa Williams
,
Yuan-Qing Wu
,
Akihiko Yamamoto
,
Yiqing Zhang
,
Yiming Zhu
,
Robert R.H. Anholt
,
Jan O. Korbel
,
David Mittelman
,
Donna M. Muzny
,
Richard A. Gibbs
,
Antonio Barbadilla
,
J. Spencer Johnston
,
Eric A. Stone
,
Stephen Richards
,
Bart Deplancke
,
and
Trudy F.C. Mackay
Genome Res.
July 2014
24
:
1193
-
1208
;
Published in Advance
April 8, 2014
,
doi:
10.1101/gr.171546.113
Abstract
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Method
:
Joint genotyping on the fly: Identifying variation among a sequenced panel of inbred lines
Eric A. Stone
Genome Res.
May 2012
22
:
966
-
974
;
Published in Advance
February 23, 2012
,
doi:
10.1101/gr.129122.111
Abstract
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Resource
:
ProPhylER: A curated online resource for protein function and structure based on evolutionary constraint analyses
Jonathan Binkley
,
Kalpana Karra
,
Andrew Kirby
,
Midori Hosobuchi
,
Eric A. Stone
,
and
Arend Sidow
Genome Res.
January 2010
20
:
142
-
154
;
Published in Advance
October 21, 2009
,
doi:
10.1101/gr.097121.109
Abstract
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ARTICLE
:
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
Elliott H. Margulies
,
Gregory M. Cooper
,
George Asimenos
,
Daryl J. Thomas
,
Colin N. Dewey
,
Adam Siepel
,
Ewan Birney
,
Damian Keefe
,
Ariel S. Schwartz
,
Minmei Hou
,
James Taylor
,
Sergey Nikolaev
,
Juan I. Montoya-Burgos
,
Ari Löytynoja
,
Simon Whelan
,
Fabio Pardi
,
Tim Massingham
,
James B. Brown
,
Peter Bickel
,
Ian Holmes
,
James C. Mullikin
,
Abel Ureta-Vidal
,
Benedict Paten
,
Eric A. Stone
,
Kate R. Rosenbloom
,
W. James Kent
,
Gerard G. Bouffard
,
Xiaobin Guan
,
Nancy F. Hansen
,
Jacquelyn R. Idol
,
Valerie V.B. Maduro
,
Baishali Maskeri
,
Jennifer C. McDowell
,
Morgan Park
,
Pamela J. Thomas
,
Alice C. Young
,
Robert W. Blakesley
,
Donna M. Muzny
,
Erica Sodergren
,
David A. Wheeler
,
Kim C. Worley
,
Huaiyang Jiang
,
George M. Weinstock
,
Richard A. Gibbs
,
Tina Graves
,
Robert Fulton
,
Elaine R. Mardis
,
Richard K. Wilson
,
Michele Clamp
,
James Cuff
,
Sante Gnerre
,
David B. Jaffe
,
Jean L. Chang
,
Kerstin Lindblad-Toh
,
Eric S. Lander
,
Angie Hinrichs
,
Heather Trumbower
,
Hiram Clawson
,
Ann Zweig
,
Robert M. Kuhn
,
Galt Barber
,
Rachel Harte
,
Donna Karolchik
,
Matthew A. Field
,
Richard A. Moore
,
Carrie A. Matthewson
,
Jacqueline E. Schein
,
Marco A. Marra
,
Stylianos E. Antonarakis
,
Serafim Batzoglou
,
Nick Goldman
,
Ross Hardison
,
David Haussler
,
Webb Miller
,
Lior Pachter
,
Eric D. Green
,
and
Arend Sidow
Genome Res.
June 2007
17
:
760
-
774
;
doi:
10.1101/gr.6034307
Abstract
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ARTICLE
:
Distribution and intensity of constraint in mammalian genomic sequence
Gregory M. Cooper
,
Eric A. Stone
,
George Asimenos
,
Eric D. Green
,
Serafim Batzoglou
,
and
Arend Sidow
Genome Res.
July 2005
15
:
901
-
913
;
Published in Advance
June 17, 2005
,
doi:
10.1101/gr.3577405
Abstract
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Methods
:
Physicochemical constraint violation by missense substitutions mediates impairment of protein function and disease severity
Eric A. Stone
and
Arend Sidow
Genome Res.
July 2005
15
:
978
-
986
;
Published in Advance
June 17, 2005
,
doi:
10.1101/gr.3804205
Abstract
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LETTER
:
Characterization of Evolutionary Rates and Constraints in Three Mammalian Genomes
Gregory M. Cooper
,
Michael Brudno
,
Eric A. Stone
,
Inna Dubchak
,
Serafim Batzoglou
,
and
Arend Sidow
Genome Res.
April 2004
14
:
539
-
548
;
doi:
10.1101/gr.2034704
Abstract
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