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  1. Method: Characterizing polymorphic inversions in human genomes by single-cell sequencing
    • Ashley D. Sanders,
    • Mark Hills,
    • David Porubský,
    • Victor Guryev,
    • Ester Falconer,
    • and Peter M. Lansdorp
    Genome Res. November 2016 26: 1575-1587; Published in Advance July 29, 2016, doi:10.1101/gr.201160.115
  2. Research: Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution
    • Adam D. Ewing,
    • Anthony Gacita,
    • Laura D. Wood,
    • Florence Ma,
    • Dongmei Xing,
    • Min-Sik Kim,
    • Srikanth S. Manda,
    • Gabriela Abril,
    • Gavin Pereira,
    • Alvin Makohon-Moore,
    • Leendert H.J. Looijenga,
    • Ad J.M. Gillis,
    • Ralph H. Hruban,
    • Robert A. Anders,
    • Katharine E. Romans,
    • Akhilesh Pandey,
    • Christine A. Iacobuzio-Donahue,
    • Bert Vogelstein,
    • Kenneth W. Kinzler,
    • Haig H. Kazazian, Jr.,
    • and Szilvia Solyom
    Genome Res. October 2015 25: 1536-1545; Published in Advance August 10, 2015, doi:10.1101/gr.196238.115
    ..., 5 , Gabriela Abril 2 , Gavin Pereira 2 , Alvin Makohon-Moore 3 , Leendert H.J. Looijenga 6 , Ad J.M. Gillis 6 , Ralph H. Hruban 3 , Robert A. Anders 3 , Katharine E. Romans 7 , Akhilesh Pandey 4 , 5 ...
  3. Method: Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics
    • Alexey Vorobev,
    • Marion Dupouy,
    • Quentin Carradec,
    • Tom O. Delmont,
    • Anita Annamalé,
    • Patrick Wincker,
    • and Eric Pelletier
    Genome Res. April 2020 30: 647-659; Published in Advance March 23, 2020, doi:10.1101/gr.253070.119
  4. Research: Unique genetic basis of the distinct antibiotic potency of high acetic acid production in the probiotic yeast Saccharomyces cerevisiae var. boulardii
    • Benjamin Offei,
    • Paul Vandecruys,
    • Stijn De Graeve,
    • María R. Foulquié-Moreno,
    • and Johan M. Thevelein
    Genome Res. September 2019 29: 1478-1494; Published in Advance August 29, 2019, doi:10.1101/gr.243147.118
    OPEN ACCESS ARTICLE
  5. Research: Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing
    • Sergey Aganezov,
    • Sara Goodwin,
    • Rachel M. Sherman,
    • Fritz J. Sedlazeck,
    • Gayatri Arun,
    • Sonam Bhatia,
    • Isac Lee,
    • Melanie Kirsche,
    • Robert Wappel,
    • Melissa Kramer,
    • Karen Kostroff,
    • David L. Spector,
    • Winston Timp,
    • W. Richard McCombie,
    • and Michael C. Schatz
    Genome Res. September 2020 30: 1258-1273; Published in Advance September 4, 2020, doi:10.1101/gr.260497.119
  6. Resource: Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution
    • Flavia Angela Maria Maggiolini,
    • Ashley D. Sanders,
    • Colin James Shew,
    • Arvis Sulovari,
    • Yafei Mao,
    • Marta Puig,
    • Claudia Rita Catacchio,
    • Maria Dellino,
    • Donato Palmisano,
    • Ludovica Mercuri,
    • Miriana Bitonto,
    • David Porubský,
    • Mario Cáceres,
    • Evan E. Eichler,
    • Mario Ventura,
    • Megan Y. Dennis,
    • Jan O. Korbel,
    • and Francesca Antonacci
    Genome Res. November 2020 30: 1680-1693; Published in Advance October 22, 2020, doi:10.1101/gr.265322.120
  7. Research: Post-transcriptional circadian regulation in macrophages organizes temporally distinct immunometabolic states
    • Emily J. Collins,
    • Mariana P. Cervantes-Silva,
    • George A. Timmons,
    • James R. O'Siorain,
    • Annie M. Curtis,
    • and Jennifer M. Hurley
    Genome Res. February 2021 31: 171-185; Published in Advance January 12, 2021, doi:10.1101/gr.263814.120
  8. Research: Transcriptome innovations in primates revealed by single-molecule long-read sequencing
    • Luis Ferrández-Peral,
    • Xiaoyu Zhan,
    • Marina Alvarez-Estape,
    • Cristina Chiva,
    • Paula Esteller-Cucala,
    • Raquel García-Pérez,
    • Eva Julià,
    • Esther Lizano,
    • Òscar Fornas,
    • Eduard Sabidó,
    • Qiye Li,
    • Tomàs Marquès-Bonet,
    • David Juan,
    • and Guojie Zhang
    Genome Res. August 2022 32: 1448-1462; Published in Advance July 15, 2022, doi:10.1101/gr.276395.121
    OPEN ACCESS ARTICLE
  9. Method: Genome-wide cancer-specific chromatin accessibility patterns derived from archival processed xenograft tumors
    • Shelsa S. Marcel,
    • Austin L. Quimby,
    • Melodie P. Noel,
    • Oscar C. Jaimes,
    • Marjan Mehrab-Mohseni,
    • Suud A. Ashur,
    • Brian Velasco,
    • James K. Tsuruta,
    • Sandeep K. Kasoji,
    • Charlene M. Santos,
    • Paul A. Dayton,
    • Joel S. Parker,
    • Ian J. Davis,
    • and Samantha G. Pattenden
    Genome Res. December 2021 31: 2327-2339; Published in Advance November 23, 2021, doi:10.1101/gr.275219.121
  10. Research: Small polymorphisms are a source of ancestral bias in structural variant breakpoint placement
    • Peter A. Audano and
    • Christine R. Beck
    Genome Res. January 2024 34: 7-19; Published in Advance January 4, 2024, doi:10.1101/gr.278203.123
    OPEN ACCESS ARTICLE
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