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Research

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  Pedigree-based estimation of human mobile element retrotransposition rates

  • Julie Feusier,
  • W. Scott Watkins,
  • Jainy Thomas,
  • Andrew Farrell,
  • David J. Witherspoon,
  • Lisa Baird,
  • Hongseok Ha,
  • Jinchuan Xing,
  • and Lynn B. Jorde

  Genome Res. October 2019 29: 1567-1577; doi:10.1101/gr.247965.118
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  LTR retroelement expansion of the human cancer transcriptome and immunopeptidome revealed by de novo transcript assembly

  • Jan Attig,
  • George R. Young,
  • Louise Hosie,
  • David Perkins,
  • Vesela Encheva-Yokoya,
  • Jonathan P. Stoye,
  • Ambrosius P. Snijders,
  • Nicola Ternette,
  • and George Kassiotis

  Genome Res. October 2019 29: 1578-1590; Published in Advance September 19, 2019, doi:10.1101/gr.248922.119
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  RNA components of the spliceosome regulate tissue- and cancer-specific alternative splicing

  • Heidi Dvinge,
  • Jamie Guenthoer,
  • Peggy L. Porter,
  • and Robert K. Bradley

  Genome Res. October 2019 29: 1591-1604; Published in Advance August 21, 2019, doi:10.1101/gr.246678.118
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  Transcriptional alterations in glioma result primarily from DNA methylation–independent mechanisms

  • Franck Court,
  • Elisa Le Boiteux,
  • Anne Fogli,
  • Mélanie Müller-Barthélémy,
  • Catherine Vaurs-Barrière,
  • Emmanuel Chautard,
  • Bruno Pereira,
  • Julian Biau,
  • Jean-Louis Kemeny,
  • Toufic Khalil,
  • Lucie Karayan-Tapon,
  • Pierre Verrelle,
  • and Philippe Arnaud

  Genome Res. October 2019 29: 1605-1621; Published in Advance September 18, 2019, doi:10.1101/gr.249219.119
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  The strand-biased mitochondrial DNA methylome and its regulation by DNMT3A

  • Xiaoyang Dou,
  • Jerome D. Boyd-Kirkup,
  • Joseph McDermott,
  • Xiaoli Zhang,
  • Fang Li,
  • Bowen Rong,
  • Rui Zhang,
  • Bisi Miao,
  • Peilin Chen,
  • Hao Cheng,
  • Jianhuang Xue,
  • David Bennett,
  • Jiemin Wong,
  • Fei Lan,
  • and Jing-Dong J. Han

  Genome Res. October 2019 29: 1622-1634; Published in Advance September 19, 2019, doi:10.1101/gr.234021.117
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  Sequence determinants of polyadenylation-mediated regulation

  • Ilya Vainberg Slutskin,
  • Adina Weinberger,
  • and Eran Segal

  Genome Res. October 2019 29: 1635-1647; Published in Advance September 17, 2019, doi:10.1101/gr.247312.118
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  Widespread cis-regulatory convergence between the extinct Tasmanian tiger and gray wolf

  • Charles Y. Feigin,
  • Axel H. Newton,
  • and Andrew J. Pask

  Genome Res. October 2019 29: 1648-1658; Published in Advance September 18, 2019, doi:10.1101/gr.244251.118
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  Dynamic reversal of random X-Chromosome inactivation during iPSC reprogramming

  • Adrian Janiszewski,
  • Irene Talon,
  • Joel Chappell,
  • Samuel Collombet,
  • Juan Song,
  • Natalie De Geest,
  • San Kit To,
  • Greet Bervoets,
  • Oskar Marin-Bejar,
  • Caterina Provenzano,
  • Lotte Vanheer,
  • Jean-Christophe Marine,
  • Florian Rambow,
  • and Vincent Pasque

  Genome Res. October 2019 29: 1659-1672; Published in Advance September 12, 2019, doi:10.1101/gr.249706.119
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  Regional epigenetic differentiation of the Z Chromosome between sexes in a female heterogametic system

  • Dan Sun,
  • Donna L. Maney,
  • Thomas S. Layman,
  • Paramita Chatterjee,
  • and Soojin V. Yi

  Genome Res. October 2019 29: 1673-1684; Published in Advance September 23, 2019, doi:10.1101/gr.248641.119
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  Fitness benefits of loss of heterozygosity in Saccharomyces hybrids

  • Samuel M. Lancaster,
  • Celia Payen,
  • Caiti Smukowski Heil,
  • and Maitreya J. Dunham

  Genome Res. October 2019 29: 1685-1692; Published in Advance September 23, 2019, doi:10.1101/gr.245605.118
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  Environmentally induced plasticity of programmed DNA elimination boosts somatic variability in Paramecium tetraurelia

  • Valerio Vitali,
  • Rebecca Hagen,
  • and Francesco Catania

  Genome Res. October 2019 29: 1693-1704; Published in Advance September 23, 2019, doi:10.1101/gr.245332.118
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