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Research

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  Whole-genome sequencing of Atacama skeleton shows novel mutations linked with dysplasia

  • Sanchita Bhattacharya,
  • Jian Li,
  • Alexandra Sockell,
  • Matthew J. Kan,
  • Felice A. Bava,
  • Shann-Ching Chen,
  • María C. Ávila-Arcos,
  • Xuhuai Ji,
  • Emery Smith,
  • Narges B. Asadi,
  • Ralph S. Lachman,
  • Hugo Y.K. Lam,
  • Carlos D. Bustamante,
  • Atul J. Butte,
  • and Garry P. Nolan

  Genome Res. April 2018 28: 423-431; Published in Advance March 22, 2018, doi:10.1101/gr.223693.117
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  Cancer-associated rs6983267 SNP and its accompanying long noncoding RNA CCAT2 induce myeloid malignancies via unique SNP-specific RNA mutations

  • Maitri Y. Shah,
  • Manuela Ferracin,
  • Valentina Pileczki,
  • Baoqing Chen,
  • Roxana Redis,
  • Linda Fabris,
  • Xinna Zhang,
  • Cristina Ivan,
  • Masayoshi Shimizu,
  • Cristian Rodriguez-Aguayo,
  • Mihnea Dragomir,
  • Katrien Van Roosbroeck,
  • Maria Ines Almeida,
  • Maria Ciccone,
  • Daniela Nedelcu,
  • Maria Angelica Cortez,
  • Taghi Manshouri,
  • Steliana Calin,
  • Muharrem Muftuoglu,
  • Pinaki P. Banerjee,
  • Mustafa H. Badiwi,
  • Jan Parker-Thornburg,
  • Asha Multani,
  • James William Welsh,
  • Marcos Roberto Estecio,
  • Hui Ling,
  • Ciprian Tomuleasa,
  • Delia Dima,
  • Hui Yang,
  • Hector Alvarez,
  • M. James You,
  • Milan Radovich,
  • Elizabeth Shpall,
  • Muller Fabbri,
  • Katy Rezvani,
  • Leonard Girnita,
  • Ioana Berindan-Neagoe,
  • Anirban Maitra,
  • Srdan Verstovsek,
  • Riccardo Fodde,
  • Carlos Bueso-Ramos,
  • Mihai Gagea,
  • Guillermo Garcia Manero,
  • and George A. Calin

  Genome Res. April 2018 28: 432-447; Published in Advance March 22, 2018, doi:10.1101/gr.225128.117
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  Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert,
  • Maša Roller,
  • Fábio C.P. Navarro,
  • Ian Fiddes,
  • Ian Streeter,
  • Christine Feig,
  • David Martin-Galvez,
  • Mikhail Kolmogorov,
  • Václav Janoušek,
  • Wasiu Akanni,
  • Bronwen Aken,
  • Sarah Aldridge,
  • Varshith Chakrapani,
  • William Chow,
  • Laura Clarke,
  • Carla Cummins,
  • Anthony Doran,
  • Matthew Dunn,
  • Leo Goodstadt,
  • Kerstin Howe,
  • Matthew Howell,
  • Ambre-Aurore Josselin,
  • Robert C. Karn,
  • Christina M. Laukaitis,
  • Lilue Jingtao,
  • Fergal Martin,
  • Matthieu Muffato,
  • Stefanie Nachtweide,
  • Michael A. Quail,
  • Cristina Sisu,
  • Mario Stanke,
  • Klara Stefflova,
  • Cock Van Oosterhout,
  • Frederic Veyrunes,
  • Ben Ward,
  • Fengtang Yang,
  • Golbahar Yazdanifar,
  • Amonida Zadissa,
  • David J. Adams,
  • Alvis Brazma,
  • Mark Gerstein,
  • Benedict Paten,
  • Son Pham,
  • Thomas M. Keane,
  • Duncan T. Odom,
  • and Paul Flicek

  Genome Res. April 2018 28: 448-459; Published in Advance March 21, 2018, doi:10.1101/gr.234096.117
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  Evolutionary origins and diversification of testis-specific short histone H2A variants in mammals

  • Antoine Molaro,
  • Janet M. Young,
  • and Harmit S. Malik

  Genome Res. April 2018 28: 460-473; Published in Advance March 16, 2018, doi:10.1101/gr.229799.117
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  Conserved microRNA targeting reveals preexisting gene dosage sensitivities that shaped amniote sex chromosome evolution

  • Sahin Naqvi,
  • Daniel W. Bellott,
  • Kathy S. Lin,
  • and David C. Page

  Genome Res. April 2018 28: 474-483; Published in Advance February 15, 2018, doi:10.1101/gr.230433.117
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  Intrinsic DNA binding properties demonstrated for lineage-specifying basic helix-loop-helix transcription factors

  • Bradford H. Casey,
  • Rahul K. Kollipara,
  • Karine Pozo,
  • and Jane E. Johnson

  Genome Res. April 2018 28: 484-496; Published in Advance March 2, 2018, doi:10.1101/gr.224360.117
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  Genome-wide determinants of sequence-specific DNA binding of general regulatory factors

  • Matthew J. Rossi,
  • William K.M. Lai,
  • and B. Franklin Pugh

  Genome Res. April 2018 28: 497-508; Published in Advance March 21, 2018, doi:10.1101/gr.229518.117
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  Promoter architecture determines cotranslational regulation of mRNA

  • Lorena Espinar,
  • Miquel Àngel Schikora Tamarit,
  • Júlia Domingo,
  • and Lucas B. Carey

  Genome Res. April 2018 28: 509-518; Published in Advance March 22, 2018, doi:10.1101/gr.230458.117
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  Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation

  • Charles J. Underwood,
  • Kyuha Choi,
  • Christophe Lambing,
  • Xiaohui Zhao,
  • Heïdi Serra,
  • Filipe Borges,
  • Joe Simorowski,
  • Evan Ernst,
  • Yannick Jacob,
  • Ian R. Henderson,
  • and Robert A. Martienssen

  Genome Res. April 2018 28: 519-531; Published in Advance March 12, 2018, doi:10.1101/gr.227116.117
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  Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions

  • Kyuha Choi,
  • Xiaohui Zhao,
  • Andrew J. Tock,
  • Christophe Lambing,
  • Charles J. Underwood,
  • Thomas J. Hardcastle,
  • Heïdi Serra,
  • Juhyun Kim,
  • Hyun Seob Cho,
  • Jaeil Kim,
  • Piotr A. Ziolkowski,
  • Nataliya E. Yelina,
  • Ildoo Hwang,
  • Robert A. Martienssen,
  • and Ian R. Henderson

  Genome Res. April 2018 28: 532-546; Published in Advance March 12, 2018, doi:10.1101/gr.225599.117
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  Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals

  • Ulrike Böhme,
  • Thomas D. Otto,
  • James A. Cotton,
  • Sascha Steinbiss,
  • Mandy Sanders,
  • Samuel O. Oyola,
  • Antoine Nicot,
  • Sylvain Gandon,
  • Kailash P. Patra,
  • Colin Herd,
  • Ellen Bushell,
  • Katarzyna K. Modrzynska,
  • Oliver Billker,
  • Joseph M. Vinetz,
  • Ana Rivero,
  • Chris I. Newbold,
  • and Matthew Berriman

  Genome Res. April 2018 28: 547-560; Published in Advance March 2, 2018, doi:10.1101/gr.218123.116
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  Selective maternal seeding and environment shape the human gut microbiome

  • Katri Korpela,
  • Paul Costea,
  • Luis Pedro Coelho,
  • Stefanie Kandels-Lewis,
  • Gonneke Willemsen,
  • Dorret I. Boomsma,
  • Nicola Segata,
  • and Peer Bork

  Genome Res. April 2018 28: 561-568; Published in Advance March 1, 2018, doi:10.1101/gr.233940.117
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