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Research

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  Pan-cancer analysis distinguishes transcriptional changes of aneuploidy from proliferation

  • Christopher Buccitelli,
  • Lorena Salgueiro,
  • Konstantina Rowald,
  • Rocio Sotillo,
  • Balca R. Mardin,
  • and Jan O. Korbel

  Genome Res. April 2017 27: 501-511; Published in Advance March 20, 2017, doi:10.1101/gr.212225.116
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  One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin

  • Alexej Abyzov,
  • Livia Tomasini,
  • Bo Zhou,
  • Nikolaos Vasmatzis,
  • Gianfilippo Coppola,
  • Mariangela Amenduni,
  • Reenal Pattni,
  • Michael Wilson,
  • Mark Gerstein,
  • Sherman Weissman,
  • Alexander E. Urban,
  • and Flora M. Vaccarino

  Genome Res. April 2017 27: 512-523; Published in Advance February 24, 2017, doi:10.1101/gr.215517.116
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  Integrated genomic analyses reveal frequent TERT aberrations in acral melanoma

  • Winnie S. Liang,
  • William Hendricks,
  • Jeffrey Kiefer,
  • Jessica Schmidt,
  • Shobana Sekar,
  • John Carpten,
  • David W. Craig,
  • Jonathan Adkins,
  • Lori Cuyugan,
  • Zarko Manojlovic,
  • Rebecca F. Halperin,
  • Adrienne Helland,
  • Sara Nasser,
  • Christophe Legendre,
  • Laurence H. Hurley,
  • Karthigayini Sivaprakasam,
  • Douglas B. Johnson,
  • Holly Crandall,
  • Klaus J. Busam,
  • Victoria Zismann,
  • Valerie Deluca,
  • Jeeyun Lee,
  • Aleksandar Sekulic,
  • Charlotte E. Ariyan,
  • Jeffrey Sosman,
  • and Jeffrey Trent

  Genome Res. April 2017 27: 524-532; doi:10.1101/gr.213348.116
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  Critical threshold levels of DNA methyltransferase 1 are required to maintain DNA methylation across the genome in human cancer cells

  • Yi Cai,
  • Hsing-Chen Tsai,
  • Ray-Whay Chiu Yen,
  • Yang W. Zhang,
  • Xiangqian Kong,
  • Wei Wang,
  • Limin Xia,
  • and Stephen B. Baylin

  Genome Res. April 2017 27: 533-544; Published in Advance February 23, 2017, doi:10.1101/gr.208108.116
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  Time-dependent genetic effects on gene expression implicate aging processes

  • Julien Bryois,
  • Alfonso Buil,
  • Pedro G. Ferreira,
  • Nikolaos I. Panousis,
  • Andrew A. Brown,
  • Ana Viñuela,
  • Alexandra Planchon,
  • Deborah Bielser,
  • Kerrin Small,
  • Tim Spector,
  • and Emmanouil T. Dermitzakis

  Genome Res. April 2017 27: 545-552; Published in Advance March 16, 2017, doi:10.1101/gr.207688.116
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  Distal CpG islands can serve as alternative promoters to transcribe genes with silenced proximal promoters

  • Shrutii Sarda,
  • Avinash Das,
  • Charles Vinson,
  • and Sridhar Hannenhalli

  Genome Res. April 2017 27: 553-566; Published in Advance February 21, 2017, doi:10.1101/gr.212050.116
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  Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos

  • Xinyi Wang,
  • Denghui Liu,
  • Dajian He,
  • Shengbao Suo,
  • Xian Xia,
  • Xiechao He,
  • Jing-Dong J. Han,
  • and Ping Zheng

  Genome Res. April 2017 27: 567-579; Published in Advance February 21, 2017, doi:10.1101/gr.198044.115
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  In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites

  • Corinne Grey,
  • Julie A.J. Clément,
  • Jérôme Buard,
  • Benjamin Leblanc,
  • Ivo Gut,
  • Marta Gut,
  • Laurent Duret,
  • and Bernard de Massy

  Genome Res. April 2017 27: 580-590; Published in Advance March 23, 2017, doi:10.1101/gr.217240.116
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  Regulation of nucleosome positioning by a CHD Type III chromatin remodeler and its relationship to developmental gene expression in Dictyostelium

  • James L. Platt,
  • Nicholas A. Kent,
  • Alan R. Kimmel,
  • and Adrian J. Harwood

  Genome Res. April 2017 27: 591-600; Published in Advance March 22, 2017, doi:10.1101/gr.216309.116
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  Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates

  • Matthew R. Olm,
  • Christopher T. Brown,
  • Brandon Brooks,
  • Brian Firek,
  • Robyn Baker,
  • David Burstein,
  • Karina Soenjoyo,
  • Brian C. Thomas,
  • Michael Morowitz,
  • and Jillian F. Banfield

  Genome Res. April 2017 27: 601-612; Published in Advance January 10, 2017, doi:10.1101/gr.213256.116
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