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  Transcription induces strand-specific mutations at the 5′ end of human genes

  • Paz Polak and
  • Peter F. Arndt

  Genome Res. August 2008 18: 1216-1223; Published in Advance May 7, 2008, doi:10.1101/gr.076570.108
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  A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation

  • Zheng Lian,
  • Alexander Karpikov,
  • Jin Lian,
  • Milind C. Mahajan,
  • Stephen Hartman,
  • Mark Gerstein,
  • Michael Snyder,
  • and Sherman M. Weissman

  Genome Res. August 2008 18: 1224-1237; Published in Advance May 16, 2008, doi:10.1101/gr.075804.107
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  Detection and characterization of silencers and enhancer-blockers in the greater CFTR locus

  • Hanna M. Petrykowska,
  • Christopher M. Vockley,
  • and Laura Elnitski

  Genome Res. August 2008 18: 1238-1246; Published in Advance April 24, 2008, doi:10.1101/gr.073817.107
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  A systematic analysis of intronic sequences downstream of 5′ splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation

  • Isabel Aznarez,
  • Yoseph Barash,
  • Ofer Shai,
  • David He,
  • Julian Zielenski,
  • Lap-Chee Tsui,
  • John Parkinson,
  • Brendan J. Frey,
  • Johanna M. Rommens,
  • and Benjamin J. Blencowe

  Genome Res. August 2008 18: 1247-1258; Published in Advance May 2, 2008, doi:10.1101/gr.073155.107
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  DXZ4 chromatin adopts an opposing conformation to that of the surrounding chromosome and acquires a novel inactive X-specific role involving CTCF and antisense transcripts

  • Brian P. Chadwick

  Genome Res. August 2008 18: 1259-1269; Published in Advance May 2, 2008, doi:10.1101/gr.075713.107
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  Comparative analysis of human chromosome 7q21 and mouse proximal chromosome 6 reveals a placental-specific imprinted gene, TFPI2/Tfpi2, which requires EHMT2 and EED for allelic-silencing

  • David Monk,
  • Alexandre Wagschal,
  • Philippe Arnaud,
  • Pari-Sima Müller,
  • Layla Parker-Katiraee,
  • Déborah Bourc’his,
  • Stephen W. Scherer,
  • Robert Feil,
  • Philip Stanier,
  • and Gudrun E. Moore

  Genome Res. August 2008 18: 1270-1281; Published in Advance May 14, 2008, doi:10.1101/gr.077115.108
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  A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep

  • Belinda J. Norris and
  • Vicki A. Whan

  Genome Res. August 2008 18: 1282-1293; Published in Advance May 20, 2008, doi:10.1101/gr.072090.107
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  Revisiting the Saccharomyces cerevisiae predicted ORFeome

  • Qian-Ru Li,
  • Anne-Ruxandra Carvunis,
  • Haiyuan Yu,
  • Jing-Dong J. Han,
  • Quan Zhong,
  • Nicolas Simonis,
  • Stanley Tam,
  • Tong Hao,
  • Niels J. Klitgord,
  • Denis Dupuy,
  • Danny Mou,
  • Ilan Wapinski,
  • Aviv Regev,
  • David E. Hill,
  • Michael E. Cusick,
  • and Marc Vidal

  Genome Res. August 2008 18: 1294-1303; Published in Advance May 23, 2008, doi:10.1101/gr.076661.108
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