Table of Contents

January 2007; 17 (1)

REVIEW

  • Synthetic biology projects in vitro

    • Anthony C. Forster and
    • George M. Church
    Genome Res. January 2007 17: 1-6; Published in Advance December 6, 2006, doi:10.1101/gr.5776007

ARTICLE

  • Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

    • Philippe Normand,
    • Pascal Lapierre,
    • Louis S. Tisa,
    • Johann Peter Gogarten,
    • Nicole Alloisio,
    • Emilie Bagnarol,
    • Carla A. Bassi,
    • Alison M. Berry,
    • Derek M. Bickhart,
    • Nathalie Choisne,
    • Arnaud Couloux,
    • Benoit Cournoyer,
    • Stephane Cruveiller,
    • Vincent Daubin,
    • Nadia Demange,
    • Maria Pilar Francino,
    • Eugene Goltsman,
    • Ying Huang,
    • Olga R. Kopp,
    • Laurent Labarre,
    • Alla Lapidus,
    • Celine Lavire,
    • Joelle Marechal,
    • Michele Martinez,
    • Juliana E. Mastronunzio,
    • Beth C. Mullin,
    • James Niemann,
    • Pierre Pujic,
    • Tania Rawnsley,
    • Zoe Rouy,
    • Chantal Schenowitz,
    • Anita Sellstedt,
    • Fernando Tavares,
    • Jeffrey P. Tomkins,
    • David Vallenet,
    • Claudio Valverde,
    • Luis G. Wall,
    • Ying Wang,
    • Claudine Medigue,
    • and David R. Benson
    Genome Res. January 2007 17: 7-15; Published in Advance December 6, 2006, doi:10.1101/gr.5798407

LETTERS

  • Human-specific insertions and deletions inferred from mammalian genome sequences

    • Feng-Chi Chen,
    • Chueng-Jong Chen,
    • Wen-Hsiung Li,
    • and Trees-Juen Chuang
    Genome Res. January 2007 17: 16-22; Published in Advance November 9, 2006, doi:10.1101/gr.5429606

  • Characterization of intron loss events in mammals

    • Jasmin Coulombe-Huntington and
    • Jacek Majewski
    Genome Res. January 2007 17: 23-32; Published in Advance November 15, 2006, doi:10.1101/gr.5703406
    OPEN ACCESS ARTICLE

  • Novel retrotransposon analysis reveals multiple mobility pathways dictated by hosts

    • Kenji Ichiyanagi,
    • Ryo Nakajima,
    • Masaki Kajikawa,
    • and Norihiro Okada
    Genome Res. January 2007 17: 33-41; Published in Advance December 6, 2006, doi:10.1101/gr.5542607

  • Contrasting evolution of expression differences in the testis between species and subspecies of the house mouse

    • Christian Voolstra,
    • Diethard Tautz,
    • Patrick Farbrother,
    • Ludwig Eichinger,
    • and Bettina Harr
    Genome Res. January 2007 17: 42-49; Published in Advance October 12, 2006, doi:10.1101/gr.5683806

  • Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots

    • João P. Gomes,
    • William J. Bruno,
    • Alexandra Nunes,
    • Nicole Santos,
    • Carlos Florindo,
    • Maria J. Borrego,
    • and Deborah Dean
    Genome Res. January 2007 17: 50-60; Published in Advance November 7, 2006, doi:10.1101/gr.5674706

  • A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?

    • Xavier Didelot,
    • Mark Achtman,
    • Julian Parkhill,
    • Nicholas R. Thomson,
    • and Daniel Falush
    Genome Res. January 2007 17: 61-68; Published in Advance November 7, 2006, doi:10.1101/gr.5512906

Methods

  • Gene discovery and annotation using LCM-454 transcriptome sequencing

    • Scott J. Emrich,
    • W. Brad Barbazuk,
    • Li Li,
    • and Patrick S. Schnable
    Genome Res. January 2007 17: 69-73; Published in Advance November 9, 2006, doi:10.1101/gr.5145806
    OPEN ACCESS ARTICLE

  • Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns

    • Tae-young Roh,
    • Gang Wei,
    • Catherine M. Farrell,
    • and Keji Zhao
    Genome Res. January 2007 17: 74-81; Published in Advance November 29, 2006, doi:10.1101/gr.5767907
    OPEN ACCESS ARTICLE

  • Localization of a long-range cis-regulatory element of IL13 by allelic transcript ratio mapping

    • Julian T. Forton,
    • Irina A. Udalova,
    • Susana Campino,
    • Kirk A. Rockett,
    • Jeremy Hull,
    • and Dominic P. Kwiatkowski
    Genome Res. January 2007 17: 82-87; Published in Advance November 29, 2006, doi:10.1101/gr.5663007

  • A model-based approach to capture genetic variation for future association studies

    • Susana Eyheramendy,
    • Jonathan Marchini,
    • Gilean McVean,
    • Simon Myers,
    • and Peter Donnelly
    Genome Res. January 2007 17: 88-95; Published in Advance November 9, 2006, doi:10.1101/gr.5675406

  • Intra- and interpopulation genotype reconstruction from tagging SNPs

    • Peristera Paschou,
    • Michael W. Mahoney,
    • Asif Javed,
    • Judith R. Kidd,
    • Andrew J. Pakstis,
    • Sheng Gu,
    • Kenneth K. Kidd,
    • and Petros Drineas
    Genome Res. January 2007 17: 96-107; Published in Advance December 6, 2006, doi:10.1101/gr.5741407

  • Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines

    • Jaswinder Khattra,
    • Allen D. Delaney,
    • Yongjun Zhao,
    • Asim Siddiqui,
    • Jennifer Asano,
    • Helen McDonald,
    • Pawan Pandoh,
    • Noreen Dhalla,
    • Anna-liisa Prabhu,
    • Kevin Ma,
    • Stephanie Lee,
    • Adrian Ally,
    • Angela Tam,
    • Danne Sa,
    • Sean Rogers,
    • David Charest,
    • Jeff Stott,
    • Scott Zuyderduyn,
    • Richard Varhol,
    • Connie Eaves,
    • Steven Jones,
    • Robert Holt,
    • Martin Hirst,
    • Pamela A. Hoodless,
    • and Marco A. Marra
    Genome Res. January 2007 17: 108-116; Published in Advance November 29, 2006, doi:10.1101/gr.5488207

RESOURCE

  • Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA

    • Eva K. Freyhult,
    • Jonathan P. Bollback,
    • and Paul P. Gardner
    Genome Res. January 2007 17: 117-125; Published in Advance December 6, 2006, doi:10.1101/gr.5890907
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This Issue

January 2007; 17 (1)
Cover
  1. REVIEW
  2. ARTICLE
  3. LETTERS
  4. Methods
  5. RESOURCE

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