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  Serum response factor binding sites differ in three human cell types

  • Sara J. Cooper,
  • Nathan D. Trinklein,
  • Loan Nguyen,
  • and Richard M. Myers

  Genome Res. February 2007 17: 136-144; Published in Advance January 2, 2007, doi:10.1101/gr.5875007
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  Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters

  • Daehyun Baek,
  • Colleen Davis,
  • Brent Ewing,
  • David Gordon,
  • and Phil Green

  Genome Res. February 2007 17: 145-155; Published in Advance January 8, 2007, doi:10.1101/gr.5872707
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  Widespread mRNA polyadenylation events in introns indicate dynamic interplay between polyadenylation and splicing

  • Bin Tian,
  • Zhenhua Pan,
  • and Ju Youn Lee

  Genome Res. February 2007 17: 156-165; Published in Advance January 8, 2007, doi:10.1101/gr.5532707
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  Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor gene repertoires in the vertebrate transition from water to land

  • Peng Shi and
  • Jianzhi Zhang

  Genome Res. February 2007 17: 166-174; Published in Advance January 8, 2007, doi:10.1101/gr.6040007
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  Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

  • Takeshi Itoh,
  • Tsuyoshi Tanaka,
  • Roberto A. Barrero,
  • Chisato Yamasaki,
  • Yasuyuki Fujii,
  • Phillip B. Hilton,
  • Baltazar A. Antonio,
  • Hideo Aono,
  • Rolf Apweiler,
  • Richard Bruskiewich,
  • Thomas Bureau,
  • Frances Burr,
  • Antonio Costa de Oliveira,
  • Galina Fuks,
  • Takuya Habara,
  • Georg Haberer,
  • Bin Han,
  • Erimi Harada,
  • Aiko T. Hiraki,
  • Hirohiko Hirochika,
  • Douglas Hoen,
  • Hiroki Hokari,
  • Satomi Hosokawa,
  • Yue Hsing,
  • Hiroshi Ikawa,
  • Kazuho Ikeo,
  • Tadashi Imanishi,
  • Yukiyo Ito,
  • Pankaj Jaiswal,
  • Masako Kanno,
  • Yoshihiro Kawahara,
  • Toshiyuki Kawamura,
  • Hiroaki Kawashima,
  • Jitendra P. Khurana,
  • Shoshi Kikuchi,
  • Setsuko Komatsu,
  • Kanako O. Koyanagi,
  • Hiromi Kubooka,
  • Damien Lieberherr,
  • Yao-Cheng Lin,
  • David Lonsdale,
  • Takashi Matsumoto,
  • Akihiro Matsuya,
  • W. Richard McCombie,
  • Joachim Messing,
  • Akio Miyao,
  • Nicola Mulder,
  • Yoshiaki Nagamura,
  • Jongmin Nam,
  • Nobukazu Namiki,
  • Hisataka Numa,
  • Shin Nurimoto,
  • Claire O’Donovan,
  • Hajime Ohyanagi,
  • Toshihisa Okido,
  • Satoshi OOta,
  • Naoki Osato,
  • Lance E. Palmer,
  • Francis Quetier,
  • Saurabh Raghuvanshi,
  • Naomi Saichi,
  • Hiroaki Sakai,
  • Yasumichi Sakai,
  • Katsumi Sakata,
  • Tetsuya Sakurai,
  • Fumihiko Sato,
  • Yoshiharu Sato,
  • Heiko Schoof,
  • Motoaki Seki,
  • Michie Shibata,
  • Yuji Shimizu,
  • Kazuo Shinozaki,
  • Yuji Shinso,
  • Nagendra K. Singh,
  • Brian Smith-White,
  • Jun-ichi Takeda,
  • Motohiko Tanino,
  • Tatiana Tatusova,
  • Supat Thongjuea,
  • Fusano Todokoro,
  • Mika Tsugane,
  • Akhilesh K. Tyagi,
  • Apichart Vanavichit,
  • Aihui Wang,
  • Rod A. Wing,
  • Kaori Yamaguchi,
  • Mayu Yamamoto,
  • Naoyuki Yamamoto,
  • Yeisoo Yu,
  • Hao Zhang,
  • Qiang Zhao,
  • Kenichi Higo,
  • Benjamin Burr,
  • Takashi Gojobori,
  • Takuji Sasaki,
  • and for the Rice Annotation Project

  Genome Res. February 2007 17: 175-183; Published in Advance January 8, 2007, doi:10.1101/gr.5509507
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  Highly efficient concerted evolution in the ribosomal DNA repeats: Total rDNA repeat variation revealed by whole-genome shotgun sequence data

  • Austen R.D. Ganley and
  • Takehiko Kobayashi

  Genome Res. February 2007 17: 184-191; Published in Advance January 2, 2007, doi:10.1101/gr.5457707
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  Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer

  • Timothy P. Stinear,
  • Torsten Seemann,
  • Sacha Pidot,
  • Wafa Frigui,
  • Gilles Reysset,
  • Thierry Garnier,
  • Guillaume Meurice,
  • David Simon,
  • Christiane Bouchier,
  • Laurence Ma,
  • Magali Tichit,
  • Jessica L. Porter,
  • Janine Ryan,
  • Paul D.R. Johnson,
  • John K. Davies,
  • Grant A. Jenkin,
  • Pamela L.C. Small,
  • Louis M. Jones,
  • Fredj Tekaia,
  • Françoise Laval,
  • Mamadou Daffé,
  • Julian Parkhill,
  • and Stewart T. Cole

  Genome Res. February 2007 17: 192-200; Published in Advance January 8, 2007, doi:10.1101/gr.5942807
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