Table of Contents

June 2005; 15 (6)

ARTICLES

  • Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris

    • Wei Qian,
    • Yantao Jia,
    • Shuang-Xi Ren,
    • Yong-Qiang He,
    • Jia-Xun Feng,
    • Ling-Feng Lu,
    • Qihong Sun,
    • Ge Ying,
    • Dong-Jie Tang,
    • Hua Tang,
    • Wei Wu,
    • Pei Hao,
    • Lifeng Wang,
    • Bo-Le Jiang,
    • Shenyan Zeng,
    • Wen-Yi Gu,
    • Gang Lu,
    • Li Rong,
    • Yingchuan Tian,
    • Zhijian Yao,
    • Gang Fu,
    • Baoshan Chen,
    • Rongxiang Fang,
    • Boqin Qiang,
    • Zhu Chen,
    • Guo-Ping Zhao,
    • Ji-Liang Tang,
    • and Chaozu He
    Genome Res. June 2005 15: 757-767; Published in Advance May 17, 2005, doi:10.1101/gr.3378705

  • Dichotomous splicing signals in exon flanks

    • Xiang H-F. Zhang,
    • Christina S. Leslie,
    • and Lawrence A. Chasin
    Genome Res. June 2005 15: 768-779; doi:10.1101/gr.3217705

LETTERS

  • Analysis of 5′ junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5′-end attachment requiring microhomology-mediated end-joining

    • Nora Zingler,
    • Ute Willhoeft,
    • Hans-Peter Brose,
    • Volker Schoder,
    • Thomas Jahns,
    • Kay-Martin O. Hanschmann,
    • Tammy A. Morrish,
    • Johannes Löwer,
    • and Gerald G. Schumann
    Genome Res. June 2005 15: 780-789; doi:10.1101/gr.3421505
    OPEN ACCESS ARTICLE

  • Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations

    • Penelope R. Haddrill,
    • Kevin R. Thornton,
    • Brian Charlesworth,
    • and Peter Andolfatto
    Genome Res. June 2005 15: 790-799; doi:10.1101/gr.3541005

  • Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing

    • Evgeny A. Glazov,
    • Michael Pheasant,
    • Elizabeth A. McGraw,
    • Gill Bejerano,
    • and John S. Mattick
    Genome Res. June 2005 15: 800-808; Published in Advance May 17, 2005, doi:10.1101/gr.3545105

  • Operon formation is driven by co-regulation and not by horizontal gene transfer

    • Morgan N. Price,
    • Katherine H. Huang,
    • Adam P. Arkin,
    • and Eric J. Alm
    Genome Res. June 2005 15: 809-819; doi:10.1101/gr.3368805
    OPEN ACCESS ARTICLE

  • Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism

    • Irina Borodina,
    • Preben Krabben,
    • and Jens Nielsen
    Genome Res. June 2005 15: 820-829; doi:10.1101/gr.3364705

Methods

  • Direct isolation and identification of promoters in the human genome

    • Tae Hoon Kim,
    • Leah O. Barrera,
    • Chunxu Qu,
    • Sara Van Calcar,
    • Nathan D. Trinklein,
    • Sara J. Cooper,
    • Rosa M. Luna,
    • Christopher K. Glass,
    • Michael G. Rosenfeld,
    • Richard M. Myers,
    • and Bing Ren
    Genome Res. June 2005 15: 830-839; Published in Advance May 17, 2005, doi:10.1101/gr.3430605

  • Footer: A quantitative comparative genomics method for efficient recognition of cis-regulatory elements

    • David L. Corcoran,
    • Eleanor Feingold,
    • Jessica Dominick,
    • Marietta Wright,
    • Jo Harnaha,
    • Massimo Trucco,
    • Nick Giannoukakis,
    • and Panayiotis V. Benos
    Genome Res. June 2005 15: 840-847; doi:10.1101/gr.2952005

  • Discovering functional transcription-factor combinations in the human cell cycle

    • Zhou Zhu,
    • Jay Shendure,
    • and George M. Church
    Genome Res. June 2005 15: 848-855; doi:10.1101/gr.3394405

  • Discovering regulatory binding-site modules using rule-based learning

    • Torgeir R. Hvidsten,
    • Bartosz Wilczyński,
    • Andriy Kryshtafovych,
    • Jerzy Tiuryn,
    • Jan Komorowski,
    • and Krzysztof Fidelis
    Genome Res. June 2005 15: 856-866; doi:10.1101/gr.3760605

  • Identification of genomic features using microsyntenies of domains: Domain teams

    • Sophie Pasek,
    • Anne Bergeron,
    • Jean-Loup Risler,
    • Alexandra Louis,
    • Emmanuelle Ollivier,
    • and Mathieu Raffinot
    Genome Res. June 2005 15: 867-874; Published in Advance May 17, 2005, doi:10.1101/gr.3638405

  • Genome-wide prediction of imprinted murine genes

    • Philippe P. Luedi,
    • Alexander J. Hartemink,
    • and Randy L. Jirtle
    Genome Res. June 2005 15: 875-884; doi:10.1101/gr.3303505

RESOURCES

  • A BAC-based physical map of the Drosophila buzzatii genome

    • Josefa González,
    • Michael Nefedov,
    • Ian Bosdet,
    • Ferran Casals,
    • Oriol Calvete,
    • Alejandra Delprat,
    • Heesun Shin,
    • Readman Chiu,
    • Carrie Mathewson,
    • Natasja Wye,
    • Roger A. Hoskins,
    • Jacqueline E. Schein,
    • Pieter de Jong,
    • and Alfredo Ruiz
    Genome Res. June 2005 15: 885-892; doi:10.1101/gr.3263105

  • AnoEST: Toward A. gambiae functional genomics

    • Evgenia V. Kriventseva,
    • Anastasios C. Koutsos,
    • Claudia Blass,
    • Fotis C. Kafatos,
    • George K. Christophides,
    • and Evgeny M. Zdobnov
    Genome Res. June 2005 15: 893-899; Published in Advance May 17, 2005, doi:10.1101/gr.3756405
    OPEN ACCESS ARTICLE
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This Issue

June 2005; 15 (6)
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  1. ARTICLES
  2. LETTERS
  3. Methods
  4. RESOURCES

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