Table of Contents

March 2005; 15 (3)

ARTICLES

  • Complex genomic rearrangements lead to novel primate gene function

    • Francesca D. Ciccarelli,
    • Christian von Mering,
    • Mikita Suyama,
    • Eoghan D. Harrington,
    • Elisa Izaurralde,
    • and Peer Bork
    Genome Res. March 2005 15: 343-351; Published in Advance February 14, 2005, doi:10.1101/gr.3266405

  • Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes

    • Toshiaki Fukui,
    • Haruyuki Atomi,
    • Tamotsu Kanai,
    • Rie Matsumi,
    • Shinsuke Fujiwara,
    • and Tadayuki Imanaka
    Genome Res. March 2005 15: 352-363; Published in Advance February 14, 2005, doi:10.1101/gr.3003105

LETTERS

  • Naturally occurring antisense: Transcriptional leakage or real overlap?

    • Dvir Dahary,
    • Orna Elroy-Stein,
    • and Rotem Sorek
    Genome Res. March 2005 15: 364-368; Published in Advance February 14, 2005, doi:10.1101/gr.3308405

  • Computational analysis of 3′-ends of ESTs shows four classes of alternative polyadenylation in human, mouse, and rat

    • Jun Yan and
    • Thomas G. Marr
    Genome Res. March 2005 15: 369-375; doi:10.1101/gr.3109605

  • Protein interaction mapping: A Drosophila case study

    • Etienne Formstecher,
    • Sandra Aresta,
    • Vincent Collura,
    • Alexandre Hamburger,
    • Alain Meil,
    • Alexandra Trehin,
    • Céline Reverdy,
    • Virginie Betin,
    • Sophie Maire,
    • Christine Brun,
    • Bernard Jacq,
    • Monique Arpin,
    • Yohanns Bellaiche,
    • Saverio Bellusci,
    • Philippe Benaroch,
    • Michel Bornens,
    • Roland Chanet,
    • Philippe Chavrier,
    • Olivier Delattre,
    • Valérie Doye,
    • Richard Fehon,
    • Gérard Faye,
    • Thierry Galli,
    • Jean-Antoine Girault,
    • Bruno Goud,
    • Jean de Gunzburg,
    • Ludger Johannes,
    • Marie-Pierre Junier,
    • Vincent Mirouse,
    • Ashim Mukherjee,
    • Dora Papadopoulo,
    • Franck Perez,
    • Anne Plessis,
    • Carine Rossé,
    • Simon Saule,
    • Dominique Stoppa-Lyonnet,
    • Alain Vincent,
    • Michael White,
    • Pierre Legrain,
    • Jérôme Wojcik,
    • Jacques Camonis,
    • and Laurent Daviet
    Genome Res. March 2005 15: 376-384; Published in Advance February 14, 2005, doi:10.1101/gr.2659105

  • Protein structure and evolutionary history determine sequence space topology

    • Boris E. Shakhnovich,
    • Eric Deeds,
    • Charles Delisi,
    • and Eugene Shakhnovich
    Genome Res. March 2005 15: 385-392; doi:10.1101/gr.3133605

  • Prokaryotic phylogenies inferred from protein structural domains

    • Eric J. Deeds,
    • Hooman Hennessey,
    • and Eugene I. Shakhnovich
    Genome Res. March 2005 15: 393-402; doi:10.1101/gr.3033805

  • From genome to “venome”: Molecular origin and evolution of the snake venom proteome inferred from phylogenetic analysis of toxin sequences and related body proteins

    • Bryan G. Fry
    Genome Res. March 2005 15: 403-420; doi:10.1101/gr.3228405

Methods

  • DIP-chip: Rapid and accurate determination of DNA-binding specificity

    • Xiao Liu,
    • David M. Noll,
    • Jason D. Lieb,
    • and Neil D. Clarke
    Genome Res. March 2005 15: 421-427; Published in Advance February 14, 2005, doi:10.1101/gr.3256505

  • Post-entrapment genome engineering: First exon size does not affect the expression of fusion transcripts generated by gene entrapment

    • Anna B. Osipovich,
    • Aparna Singh,
    • and H. Earl Ruley
    Genome Res. March 2005 15: 428-435; doi:10.1101/gr.3258105

RESOURCES

  • novoSNP, a novel computational tool for sequence variation discovery

    • Stefan Weckx,
    • Jurgen Del-Favero,
    • Rosa Rademakers,
    • Lieve Claes,
    • Marc Cruts,
    • Peter De Jonghe,
    • Christine Van Broeckhoven,
    • and Peter De Rijk
    Genome Res. March 2005 15: 436-442; doi:10.1101/gr.2754005

  • Database of mRNA gene expression profiles of multiple human organs

    • Chang Gue Son,
    • Sven Bilke,
    • Sean Davis,
    • Braden T. Greer,
    • Jun S. Wei,
    • Craig C. Whiteford,
    • Qing-Rong Chen,
    • Nicola Cenacchi,
    • and Javed Khan
    Genome Res. March 2005 15: 443-450; doi:10.1101/gr.3124505

ERRATUM

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This Issue

March 2005; 15 (3)
Cover
  1. ARTICLES
  2. LETTERS
  3. Methods
  4. RESOURCES
  5. ERRATUM

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