Table of Contents

LETTERS

• Select this article

  An intermediate grade of finished genomic sequence suitable for comparative analyses

  • Robert W. Blakesley,
  • Nancy F. Hansen,
  • James C. Mullikin,
  • Pamela J. Thomas,
  • Jennifer C. McDowell,
  • Baishali Maskeri,
  • Alice C. Young,
  • Beatrice Benjamin,
  • Shelise Y. Brooks,
  • Bradley I. Coleman,
  • Jyoti Gupta,
  • Shi-Ling Ho,
  • Eric M. Karlins,
  • Quino L. Maduro,
  • Sirintorn Stantripop,
  • Cyrus Tsurgeon,
  • Jennifer L. Vogt,
  • Michelle A. Walker,
  • Catherine A. Masiello,
  • Xiaobin Guan,
  • NISC Comparative Sequencing Program,
  • Gerard G. Bouffard,
  • and Eric D. Green

  Genome Res. November 2004 14: 2235-2244; Published in Advance October 12, 2004, doi:10.1101/gr.2648404
  • Abstract
  • Full Text
  • Full Text (PDF)
• Select this article

  Whole-genome analysis of Alu repeat elements reveals complex evolutionary history

  • Alkes L. Price,
  • Eleazar Eskin,
  • and Pavel A. Pevzner

  Genome Res. November 2004 14: 2245-2252; doi:10.1101/gr.2693004
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Research Data
• Select this article

  The human L1 promoter: Variable transcription initiation sites and a major impact of upstream flanking sequence on promoter activity

  • Laurence Lavie,
  • Esther Maldener,
  • Brook Brouha,
  • Eckart U. Meese,
  • and Jens Mayer

  Genome Res. November 2004 14: 2253-2260; doi:10.1101/gr.2745804
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Research Data
• Select this article

  An active murine transposon family pair: Retrotransposition of “master” MusD copies and ETn trans-mobilization

  • David Ribet,
  • Marie Dewannieux,
  • and Thierry Heidmann

  Genome Res. November 2004 14: 2261-2267; Published in Advance October 12, 2004, doi:10.1101/gr.2924904
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Research Data
• Select this article

  Properties of overlapping genes are conserved across microbial genomes

  • Zackary I. Johnson and
  • Sallie W. Chisholm

  Genome Res. November 2004 14: 2268-2272; doi:10.1101/gr.2433104
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Research Data
• Select this article

  Ψ-Φ: Exploring the outer limits of bacterial pseudogenes

  • Emmanuelle Lerat and
  • Howard Ochman

  Genome Res. November 2004 14: 2273-2278; Published in Advance October 12, 2004, doi:10.1101/gr.2925604
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Research Data
• Select this article

  Codon usage bias from tRNA's point of view: Redundancy, specialization, and efficient decoding for translation optimization

  • Eduardo P.C. Rocha

  Genome Res. November 2004 14: 2279-2286; Published in Advance October 12, 2004, doi:10.1101/gr.2896904
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Research Data
  • Correction
• Select this article

  The molecular structure of the DNA fragments eliminated during chromatin diminution in Cyclops kolensis

  • Sergei Degtyarev,
  • Tatiana Boykova,
  • Andrei Grishanin,
  • Stepan Belyakin,
  • Nikolai Rubtsov,
  • Tatiana Karamysheva,
  • Grigory Makarevich,
  • Alexei Akifyev,
  • and Igor Zhimulev

  Genome Res. November 2004 14: 2287-2294; doi:10.1101/gr.2794604
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Research Data
• Select this article

  Patterns of large-scale genomic variation in virulent and avirulent Burkholderia species

  • Catherine Ong,
  • Chia Huey Ooi,
  • Dongling Wang,
  • Hweeling Chong,
  • Kim Chong Ng,
  • Fiona Rodrigues,
  • May Ann Lee,
  • and Patrick Tan

  Genome Res. November 2004 14: 2295-2307; doi:10.1101/gr.1608904
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Research Data
• Select this article

  Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle

  • Karine G. Le Roch,
  • Jeffrey R. Johnson,
  • Laurence Florens,
  • Yingyao Zhou,
  • Andrey Santrosyan,
  • Munira Grainger,
  • S. Frank Yan,
  • Kim C. Williamson,
  • Anthony A. Holder,
  • Daniel J. Carucci,
  • John R. Yates III,
  • and Elizabeth A. Winzeler

  Genome Res. November 2004 14: 2308-2318; doi:10.1101/gr.2523904
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Research Data
• Select this article

  Isolation of the repertoire of VSG expression site containing telomeres of Trypanosoma brucei 427 using transformation-associated recombination in yeast

  • Marion Becker,
  • Niall Aitcheson,
  • Elaine Byles,
  • Bill Wickstead,
  • Edward Louis,
  • and Gloria Rudenko

  Genome Res. November 2004 14: 2319-2329; doi:10.1101/gr.2955304
  • Abstract
  • Full Text
  • Full Text (PDF)