Table of Contents

PERSPECTIVE

Select this article
ORFeome Cloning and Systems Biology: Standardized Mass Production of the Parts From the Parts-List
- Michael A. Brasch,
- James L. Hartley,
- and Marc Vidal
Genome Res. October 15, 2004 14: 2001-2009; doi:10.1101/gr.2769804

Insight/Outlook

Select this article
Academia-Industry Collaboration: An Integral Element for Building “Omic” Resources
- David E. Hill,
- Michael A. Brasch,
- Anthony A. del Campo,
- Lynn Doucette-Stamm,
- James I. Garrels,
- Judith Glaven,
- James L. Hartley,
- James R. Hudson, Jr.,
- Troy Moore,
- and Marc Vidal
Genome Res. October 15, 2004 14: 2010-2014; doi:10.1101/gr.2771404

COMMENTARY

Select this article
The Responsibility to Share: Sharing the Responsibility
- Martin Yuille,
- Bernhard Korn,
- Troy Moore,
- Andrew A. Farmer,
- John Carrino,
- Christa Prange,
- and Yoshihide Hayashizaki
Genome Res. October 15, 2004 14: 2015-2019; doi:10.1101/gr.2677304

REVIEWS

Select this article
Many Paths to Many Clones: A Comparative Look at High-Throughput Cloning Methods
- Gerald Marsischky and
- Joshua LaBaer
Genome Res. October 15, 2004 14: 2020-2028; doi:10.1101/gr.2528804
Select this article
From ORFeomes to Protein Interaction Maps in Viruses
- Peter Uetz,
- Seesandra V. Rajagopala,
- Yu-An Dong,
- and Jürgen Haas
Genome Res. October 15, 2004 14: 2029-2033; doi:10.1101/gr.2583304

LETTERS

Select this article
Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing
- Terrence S. Furey,
- Mark Diekhans,
- Yontao Lu,
- Tina A. Graves,
- Lachlan Oddy,
- Jennifer Randall-Maher,
- LaDeana W. Hillier,
- Richard K. Wilson,
- and David Haussler
Genome Res. October 15, 2004 14: 2034-2040; doi:10.1101/gr.2467904
Select this article
An ORFeome-based Analysis of Human Transcription Factor Genes and the Construction of a Microarray to Interrogate Their Expression
- David N. Messina,
- Jarret Glasscock,
- Warren Gish,
- and Michael Lovett
Genome Res. October 15, 2004 14: 2041-2047; doi:10.1101/gr.2584104
Select this article
Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs
- Masaaki Oyama,
- Chiharu Itagaki,
- Hiroko Hata,
- Yutaka Suzuki,
- Tomonori Izumi,
- Tohru Natsume,
- Toshiaki Isobe,
- and Sumio Sugano
Genome Res. October 15, 2004 14: 2048-2052; doi:10.1101/gr.2384604
Select this article
1274 Full-Open Reading Frames of Transcripts Expressed in the Developing Mouse Nervous System
- Maria F. Bonaldo,
- Thomas B. Bair,
- Todd E. Scheetz,
- Einat Snir,
- Ike Akabogu,
- Jennifer L. Bair,
- Brian Berger,
- Keith Crouch,
- Aja Davis,
- Mari E. Eyestone,
- Catherine Keppel,
- Tamara A. Kucaba,
- Mark Lebeck,
- Jenny L. Lin,
- Anna I.R. de Melo,
- Joshua Rehmann,
- Rebecca S. Reiter,
- Kelly Schaefer,
- Christina Smith,
- Dylan Tack,
- Kurtis Trout,
- Val C. Sheffield,
- Jim J-C. Lin,
- Thomas L. Casavant,
- and Marcelo B. Soares
Genome Res. October 15, 2004 14: 2053-2063; doi:10.1101/gr.2601304
Select this article
C. elegans ORFeome Version 3.1: Increasing the Coverage of ORFeome Resources With Improved Gene Predictions
- Philippe Lamesch,
- Stuart Milstein,
- Tong Hao,
- Jennifer Rosenberg,
- Ning Li,
- Reynaldo Sequerra,
- Stephanie Bosak,
- Lynn Doucette-Stamm,
- Jean Vandenhaute,
- David E. Hill,
- and Marc Vidal
Genome Res. October 15, 2004 14: 2064-2069; doi:10.1101/gr.2496804
Select this article
Feasibility of Genome-Scale Construction of Promoter::Reporter Gene Fusions for Expression in Caenorhabditis elegans Using a MultiSite Gateway Recombination System
- Ian A. Hope,
- Jonathan Stevens,
- Anna Garner,
- Josie Hayes,
- David L. Cheo,
- Michael A. Brasch,
- and Marc Vidal
Genome Res. October 15, 2004 14: 2070-2075; doi:10.1101/gr.2463804
Select this article
High-Throughput Generation of P. falciparum Functional Molecules by Recombinational Cloning
- João Carlos Aguiar,
- Joshua LaBaer,
- Peter L. Blair,
- Victoria Y. Shamailova,
- Malvika Koundinya,
- Joshua A. Russell,
- Fengying Huang,
- Wenhong Mar,
- Robert M. Anthony,
- Adam Witney,
- Sonia R. Caruana,
- Leonardo Brizuela,
- John B. Sacci, Jr.,
- Stephen L. Hoffman,
- and Daniel J. Carucci
Genome Res. October 15, 2004 14: 2076-2082; doi:10.1101/gr.2416604

Methods

Select this article
Systematic Recovery and Analysis of Full-ORF Human cDNA Clones
- Ágnes Baross,
- Yaron S.N. Butterfield,
- Shaun M. Coughlin,
- Thomas Zeng,
- Malachi Griffith,
- Obi L. Griffith,
- Anca S. Petrescu,
- Duane E. Smailus,
- Jaswinder Khattra,
- Helen L. McDonald,
- Sheldon J. McKay,
- Michelle Moksa,
- Robert A. Holt,
- and Marco A. Marra
Genome Res. October 15, 2004 14: 2083-2092; doi:10.1101/gr.2473704
Select this article
A Gateway-Compatible Yeast One-Hybrid System
- Bart Deplancke,
- Denis Dupuy,
- Marc Vidal,
- and Albertha J.M. Walhout
Genome Res. October 15, 2004 14: 2093-2101; doi:10.1101/gr.2445504
Select this article
High-Throughput Expression of C. elegans Proteins
- Chi-Hao Luan,
- Shihong Qiu,
- James B. Finley,
- Mike Carson,
- Rita J. Gray,
- Wenying Huang,
- David Johnson,
- Jun Tsao,
- Jérôme Reboul,
- Philippe Vaglio,
- David E. Hill,
- Marc Vidal,
- Lawrence J. DeLucas,
- and Ming Luo
Genome Res. October 15, 2004 14: 2102-2110; doi:10.1101/gr.2520504
Select this article
Concerted Assembly and Cloning of Multiple DNA Segments Using In Vitro Site-Specific Recombination: Functional Analysis of Multi-Segment Expression Clones
- David L. Cheo,
- Steven A. Titus,
- Devon R.N. Byrd,
- James L. Hartley,
- Gary F. Temple,
- and Michael A. Brasch
Genome Res. October 15, 2004 14: 2111-2120; doi:10.1101/gr.2512204

PERSPECTIVE

ORFeome Cloning and Systems Biology: Standardized Mass Production of the Parts From the Parts-List

Insight/Outlook

Academia-Industry Collaboration: An Integral Element for Building “Omic” Resources

COMMENTARY

The Responsibility to Share: Sharing the Responsibility

REVIEWS

Many Paths to Many Clones: A Comparative Look at High-Throughput Cloning Methods

From ORFeomes to Protein Interaction Maps in Viruses

LETTERS

Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing

An ORFeome-based Analysis of Human Transcription Factor Genes and the Construction of a Microarray to Interrogate Their Expression

Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs

1274 Full-Open Reading Frames of Transcripts Expressed in the Developing Mouse Nervous System

C. elegans ORFeome Version 3.1: Increasing the Coverage of ORFeome Resources With Improved Gene Predictions

Feasibility of Genome-Scale Construction of Promoter::Reporter Gene Fusions for Expression in Caenorhabditis elegans Using a MultiSite Gateway Recombination System

High-Throughput Generation of P. falciparum Functional Molecules by Recombinational Cloning

Methods

Systematic Recovery and Analysis of Full-ORF Human cDNA Clones

A Gateway-Compatible Yeast One-Hybrid System

High-Throughput Expression of C. elegans Proteins

Concerted Assembly and Cloning of Multiple DNA Segments Using In Vitro Site-Specific Recombination: Functional Analysis of Multi-Segment Expression Clones

RESOURCES

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Human ORFeome Version 1.1: A Platform for Reverse Proteomics

From ORFeome to Biology: A Functional Genomics Pipeline

High-Throughput Computational and Experimental Techniques in Structural Genomics

WormBase as an Integrated Platform for the C. elegans ORFeome

Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based RNAi Library

A First Version of the Caenorhabditis elegans Promoterome

Versatile Gene-Specific Sequence Tags for Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications

The Pseudomonas aeruginosa PA01 Gene Collection

Generation of the Brucella melitensis ORFeome Version 1.1

This Issue

Preprint Server

Current Issue

In This Issue