Table 5.
Summary of Zebrafish–Human Conserved Syntenies
| Zebrafish | Human | Zebrafish | Human | ||||
| LG | gene | gene | location | LG | gene | gene | location |
| 1 | OTX3 | OTX1 | 02p13 | 12 | HOXBB | HOXB | 17q21–q22 |
| DLX5 | DLX2 | 02q32 | RARA2A | RARA | 17q12 | ||
| DLX3 | DLX3 | 17q21.3–q22 | |||||
| 2 | RXRA | RXRG | 01q22–q23 | ||||
| CPLA2 | PLA2G4 | 01q25 | 13 | RET1 | RET | 10q11.2 | |
| PAX2 | PAX2 | 10q24.3–q25.1 | |||||
| TWHH | SHH | 07q36 | |||||
| ENG3 | EN2 | 07q36 | 14 | MSXE | MSX1 | 04p16.1 | |
| FLK1 | FLK1 | 04q12 | |||||
| 3 | RARA2B | RARA | 17q12 | ||||
| CDC27 | CDC27 | 17q12–q23.2 | NGR1 | NEUROD3 | 05q23–q31 | ||
| HOXBA | HOXB | 17q21–q22 | SMAD5 | MADH5 | 05q3 | ||
| EGR1 | EGR1 | 05q31.1 | |||||
| 5 | ISL1 | ISL1 | 05q | TEC | EMT | 05q32 | |
| SVP44 | TFCOUP1 | 05q14 | NKX2.5 | CSX | 05q34 | ||
| LIM6 | LHX1 | 11p13–p12 | 15 | LIM1 | LHX1 | 11p13–p12 | |
| WNT11 | WNT11 | 11q13.5 | MEL1B | MTNR1B | 11q21–q22 | ||
| APOA | APOA1/4 | 11q23 | |||||
| 17 | PAX9 | PAX9 | 14q12–q13 | ||||
| 6 | JAK1 | JAK1 | 01p31.3 | OTX2 | OTX2 | 14q21–q22 | |
| TIE1 | TIE | 01p34–p33 | BMP4 | BMP4 | 14q22–q23 | ||
| BRN1.2 | POU3F1 | 01p34.1 | GSC | GSC | 14q32.1–q32.1 | ||
| 7 | ENG2 | EN2 | 07q36 | AXIAL | HNF3B | 20p11 | |
| SHH | SHH | 07q36 | SNAP25B | SNAP25 | 20p11.2 | ||
| BMP2a | BMP2 | 20p12 | |||||
| CYCD1 | CCND1 | 11q13 | |||||
| FGF3 | FGF3 | 11q13 | 19 | RXRE | RXRB | 06p21.3 | |
| CK2B | CK2B | 06p21.3 | |||||
| VNC | CDH11 | 16 | MHC1UAA | MHCl | 06p21.3 | ||
| CK2A2 | CSNK2A2 | 16q13 | NTL | T | 06q27 | ||
| 9 | ACTBB | INHBB | 02cen–q13 | DLX6 | DLX6 | 07q22 | |
| ENG1 | EN1 | 02q13–q21 | HOXAA | HOXA | 07p15–p14.2 | ||
| EVX2 | EVX2 | 02q31–q32 | |||||
| HOXDA | HOXD | 02q31–q2 | 20 | SNAP25A | SNAP25 | 20p11.2 | |
| DLX1 | DLX1 | 02q32 | BMP2B | BMP2 | 20p12 | ||
| DLX2 | DLX2 | 02q32 | |||||
| DESMIN | DES | 02q35 | 21 | POU2 | POU5F1 | 06p21.3 | |
| BF | BF/C2 | 06p21.3 | |||||
| BRN1.1 | POU3F3 | 03p14.2 | |||||
| ACTR2A | ACVR2B | 03p22–p21.3 | 23 | WNT1 | WNT1 | 12q12q–q13 | |
| PRIM1 | PRIM1 | 12q13 | |||||
| 10 | WNT11r | WNT11 | 11q13.5 | TARAMA | ACVR1B | 12q13 | |
| HSC70 | HSPA8 | 11q23.3–q25 | HOXCA | HOXC | 12q13 | ||
| RARG | RARG | 12q13 | |||||
| SMAD2 | MADH2 | 18q21 | WNT10BR | WNT10B | 12q13 | ||
| SMAD4 | MADH4 | 18q21.1 | |||||
| 25 | WT1 | WT1 | 11p13 | ||||
| 11 | PLASTICIN | PRPH | 12q12–q13 | PAX6 | PAX6 | 11p13 | |
| HOXCB | HOXC | 12q13 | RAG1 | RAG1 | 11p13 | ||
| MYOD | MYOD1 | 11p15.4 | |||||
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This summary of genes that define conserved syntenies was compiled from the analysis shown in Tables 1 and 3 and, in the case of the Hox clusters, Amores et al. (1998).
