The Nuclear Receptor Superfamily Has Undergone Extensive Proliferation and Diversification in Nematodes

Table 3.

C. elegans NR Genes Represented by ESTs

Chromosome Gene Genome ORF ESTs Comments
I nhr-49 K10C3.6 yk61c12, yk26f4,  yk242b12, yk212f7
nhr-62 K10C3.1 yk63h9, yk354c12 ORF truncated at cosmid end;  ESTs reveal DBD
nhr-64 C45E1.1 yk384e7
II nhr-22 K06A1.4 yk324h4, yk325g8
nhr-61 W01D2.2 yk442a3 EST splicing different than  ORF prediction
IV nhr-31 C26B2.3 yk221a5, yk296b12,  yk192f3, yk226h10 EST splicing different than  ORF prediction
nhr-34 F58G6.5 yk201f9
nhr-43 C29E6.5 yk89g11
nhr-46 C45E5.6 yk5b9, yk82e1,  yk36g3, yk327d10,  yk412d10
nhr-66 T09A12.4 yk195d2, yk295g11,  yk374f3, yk432g1 EST splicing different than  ORF prediction
nhr-67 C08F8.a yk273f2
V nhr-12 R04B5.4 cm06h9
nhr-42 C33G8.6 yk482f11 EST splicing different than  ORF prediction
nhr-44 T19A5.4b yk157h5 ORF has two DBDs,  likely operon
nhr-47 T05C3.1 csr-1 (GenBank accession no.U41296)
nhr-50 C06C6.5 yk311d1
nhr-51 K06B4.1 yk271b11 (5′) EST has sequences from  two ORFs
nhr-52 K06B4.2 yk271b11 (3′) EST has sequences from  two ORFs
nhr-53 K06B4.11 yk458f7, yk464a6 EST splicing different than  ORF prediction
nhr-54 F36D3.2 yk123a5
nhr-55 T01G6.7 yk255f5, yk412g5
nhr-56 F44C8.6 yk304h10
nhr-57 T05B4.2 yk370h8, yk203b8
nhr-58 R11G11.2 yk308e2
nhr-59 T27B7.1 yk490h1
nhr-60 F57A10.5 yk470e6
nhr-63 C06C6.4 yk474f10
nhr-65 Y17D7A.3 yk480h4 incomplete DBD
X nhr-25 F11C1.6 yk174f2, yk342d8
nhr-28 C11G6.4 yk158g9 EST splicing different than  ORF prediction
nhr-35 C07A12.3 yk215f10
nhr-40 T03G6.2 yk213d2
nhr-45 F16H11.5 yk347g3 EST 5′ end has inverted  duplication
nhr-48 ZK662.3 yk226g12, yk333f9 EST splicing different than  ORF prediction

This Article

  1. Genome Res. 9: 103-120

Preprint Server