A truncated example of the analysis of a contig containing the humanDFNA1 gene, a homolog of the Drosophila diaphanous gene. Numbers at left between the first three horizontal lines are for illustration purposes only and are not in the actual display. Lines 1–6 are translations of the six reading frames of the sequence segment, displayed above the data sequence (line 7). Lines 8–11 are results from BLAST searches against public and local databases shown in alignment with the data sequence. Line8 is the result from searches against nonredundant amino acid databases, line 9 against nonredundant nucleic acid databases, and lines 10 and 11 against local database (sequencing reads). Sequences, as in lines 10 and 11,are the constituent sequences used to construct the consensus data sequence on line 7. Discrepancies between data sequence and database sequences are indicated in magenta. Line 7 displays part of a predicted CpG island displayed in orange. Lines 3and 5 contain predicted exons and are displayed in red. Other lines can be interpreted similarly. Additional database search results have been omitted. Clicking on the right-hand link will lead to the web page for relevant database search results in BLAST output format for details of the matches. From this web page, further links can lead to complete entries of the relevant data in remote databases. (No repeat elements or ESTs have been found in the displayed segment).
